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  3. RAFL04-13-D06

RAFL04-13-D06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00516)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-D06 - full reading 
ACGCACTGCG CCGCCAAAAA ACCCTTCTTT AAACCCTTTC CTCCTCGCGC 
CGTCATGCAA GCCACCATCT TCTCTCCACG CGCCACTCTC TTCCCCTGTA 
AACCTCTCCT CCCTTCCCAC AATGTCAACT CTCGCCGTCC CTCAATCATC 
TCCTGCTCCG CCCAATCCGT AACCGCTGAT CCTTCACCAC CTATCACTGA 
CACCAATAAG CTCAACAAAT ACAGCTCAAG AATCACTGAA CCCAAATCCC 
AAGGTGGGTC TCAAGCAATT CTTCACGGTG TTGGTTTATC AGACGACGAT 
TTGCTAAAAC CCCAGATTGG TATCTCGTCG GTTTGGTATG AAGGGAACAC 
TTGTAACATG CATTTGCTGA AATTGTCTGA GGCTGTGAAA GAAGGAGTTG 
AAAATGCAGG AATGGTTGGG TTTAGGTTTA ATACTATTGG TGTGAGTGAT 
GCTATTTCGA TGGGAACGAG AGGGATGTGT TTTAGTTTGC AATCTAGGGA 
TTTGATTGCT GATAGTATTG AGACTGTTAT GAGTGCTCAG TGGTATGATG 
GTAACATATC TATTCCCGGT TGTGATAAAA ATATGCCTGG AACTATTATG 
GCTATGGGAA GGCTTAACAG ACCAGGGATT ATGGTTTATG GTGGAACCAT 
TAAGCCTGGC CATTTTCAAG ACAAGACATA TGACATTGTA TCTGCTTTCC 
AGAGTTATGG AGAATTTGTT AGTGGCTCCA TAAGTGATGA ACAGAGAAAG 
ACTGTCCTCC ATCATTCATG TCCTGGAGCT GGAGCCTGTG GTGGCATGTA 
CACAGCGAAT ACAATGGCTT CTGCTATCGG AGCAATGGGA ATGTCCCTTC 
CTTACAGTTC TTCAATACCT GCTGAAGACC CATTGAAGTT GGACGAGTGT 
CGCTTAGCAG GAAAATATCT TCTAGAATTG CTAAAGATGG ACTTAAAACC 
CCGTGACATT ATCACTCCAA AATCACTTCG TAATGCAATG GTTTCCGTCA 
TGGCCCTTGG GGGATCGACA AATGCAGTAT TGCATCTAAT TGCTATTGCA 
AGGTCTGTTG GTTTGGAGTT GACTCTTGAC GATTTTCAGA AAGTTAGCGA 
TGCGGTTCCA TTTCTAGCAG ATCTTAAACC CAGTGGGAAG TATGTTATGG 
AGGATATACA TAAGATAGGT GGTACGCCAG CTGTTCTCCG CTATTTATTA 
GAGCTAGGAT TGATGGATGG TGATTGTATG ACAGTGACAG GGCAGACTTT 
GGCTCAAAAT TTAGAAAACG TCCCAAGCTT AACAGAAGGG CAGGAGATAA 
TTAGACCTCT GTCAAATCCA ATCAAGGAGA CTGGACACAT ACAAATTTTG 
AGAGGAGACC TTGCACCAGA TGGTTCTGTA GCAAAAATTA CCGGCAAAGA 
GGGCTTATAT TTCTCTGGTC CTGCACTTGT ATTTGAAGGA GAGGAATCTA 
TGTTGGCTGC TATATCAGCA GACCCAATGA GTTTTAAGGG AACTGTGGTT 
GTTATCAGAG GAGAGGGGCC TAAAGGAGGT CCAGGTATGC CTGAGATGTT 
GACACCGACA AGTGCAATAA TGGGTGCCGG TCTTGGAAAG GAATGTGCAT 
TACTGACTGA TGGTAGGTTC TCTGGTGGGT CACACGGTTT TGTTGTTGGC 
CACATTTGCC CTGAAGCTCA GGAGGGTGGT CCGATCGGTC TGATCAAGAA 
CGGAGACATA ATCACCATTG ACATAGGAAA GAAGAGAATA GACACACAAG 
TCTCACCCGA AGAAATGAAT GACCGTAGAA AGAAATGGAC TGCTCCTGCA 
TACAAGGTTA ACCGCGGAGT CCTATATAAG TACATCAAGA ACGTGCAATC 
GGCTTCAGAT GGATGTGTGA CTGACGAGTA AAGTGAACGA TCTAAGAGAG 
AGTTTTGTGA ATGAGCAGCA GAATGTAGTG TACGTTCATG AGGGAATTTG 
TAAGTTTATT TATTGTAGCT TCTAGATCAT GTTACTTTGT GACTGATCAT 
TAGCTATTTG CAGGGTTCGT TTTTAAGATT TTGTTTCTCT TAAATGTCAA 
AATAAAAACT TGTGATTGTG GCCGAATTCC AAAGAATATA AAGACAGAAT 
AAAGACGGAT TTGCACAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G23940.1 [+] show detail - dehydratase family
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
PatternScan Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site 0
PatternScan Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site 0
HMMPfam Dihydroxy-acid/6-phosphogluconate dehydratase 1.4e-210
HMMTigr Dihydroxy-acid dehydratase 3.2e-297
HAMAP Dihydroxy-acid dehydratase 40.986
HMMPanther Dihydroxy-acid/6-phosphogluconate dehydratase 1.9e-264

See the detailed result >

AT3G23940.1

Model type
Protein coding
Short Description
dehydratase family
Computational Description
dehydratase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: pollen development; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (InterPro:IPR020558), Dihydroxy-acid/6-phosphogluconate dehydratase (InterPro:IPR000581); Has 13943 Blast hits to 13934 proteins in 2322 species: Archae - 210; Bacteria - 7441; Metazoa - 5; Fungi - 304; Plants - 157; Viruses - 0; Other Eukaryotes - 5826 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-D06 introduced

  • F16038 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found