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  3. RAFL04-13-D07

RAFL04-13-D07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00330)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-D07 - full reading 
AAAGAGTTTT AGGTTTTTTT TTCTTCTTCT CGGAGGTTTG TAGAATCAAC 
AAAAATGGTG GAAGACCACA AGCACGAGGA ATCGATCTTG GAGAAGATTG 
TTGAGAAGAT CCATGGCCAC GGTGACTCGT CTTCTCTGTC CGATTCCGAC 
GACGATAAGA AATCTACATC GTCTTCGTCG TCGTCCTTCA AGTCAAAGAT 
TTACCGACTT TTCGGAAGGG AGAAACCTGT TCACAAGGTT CTCGGTGGTG 
GAAAACCTGC TGATATATTC CTTTGGAGGA ACAAGAAGGT ATCTGGTGGA 
GTCTTGGGTG CTGTAACTGC GTCTTGGGTC TTATTCGAGT TATTCGAATA 
CCATCTCCTC GCTTTTCTCT GTCACTTTGC GATTTTTGCT CTTGCAGCAT 
TGTTCTTGTG GTCTAATGCT TGTACATTCA TCCACAAGTC AACTCCTCAC 
ATCCCGGAAG TTCACATCCC TGAAGATCCT ATTCTTCAAC TTGTTTCTGG 
ATTAAGGATT GAAATCAATC GTGGTTTGAC CCTTCTTAGG AACATTGCAT 
CAGGAAAAGA TGTCAAGAAA TTTATCCTGG TAATTGCTGG CTTGTGGGTT 
TTGTCCATTA TTGGCAGCTG CTACAACTTC TTGACATTGT TCTACACTGC 
TACTGTCCTT CTCTTCACCA TTCCTGTACT CTACGAGAAG TATGAGGACA 
AAGTAGATGC CTATGGGGAG AAGGCGATGA GGGAGATCAA AAAGCAATAT 
GCAGTACTTG ATGAGAAGGT ATTGCGTAAG GTCATAAGCA AGATTCCAAG 
AGGAGCTCTG AACAAGAAGA AGGATTAAGG AATGTGAGTT ACTCTCTCAT 
TGGAATCGTA GTAATGGTTC AAGACATGTT TTGTTAGAAG CTGTTGGTTG 
ATAAACCCTT TGATCTCTTG TTATTATTAT GTTCATTATA AATTTGGGGG 
TTTTAACTAA AAATATTTAG ATTATGAGAG AACACGGATG CATGATAATT 
ATTGTTGTTA GTTATTTGTC TTAGTTAATT TCTCATCCTT TTAACAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G41600.1 [+] show detail - VIRB2-interacting protein 3
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Reticulon 6.5e-56
ProfileScan Reticulon 43.011
HMMPanther RETICULON-RELATED (PLANT) 6.5e-104
HMMPanther Reticulon 6.5e-104

See the detailed result >

AT5G41600.1

Model type
Protein coding
Short Description
VIRB2-interacting protein 3
Computational Description
VIRB2-interacting protein 3 (BTI3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulan like protein B3 (TAIR:AT1G64090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-D07 introduced

  • F10508 - Specific phenotypes were NOT observed.
  • F19338 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found