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  3. RAFL04-13-F08

RAFL04-13-F08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00355)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-F08 - full reading 
GAAAGAAACC CACAGCAACA AACAGAGAAA ATGTGTGGCG GTGCTATTAT 
TTCCGATTAT GCCCCTCTCG TCACCAAGGC CAAGGGCCGT AAACTCACGG 
CTGAGGAACT CTGGTCAGAG CTCGATGCTT CCGCCGCCGA CGACTTCTGG 
GGTTTCTATT CCACCTCCAA ACTCCATCCC ACCAACCAAG TTAACGTGAA 
AGAGGAGGCA GTGAAGAAGG AGCAGGCAAC AGAGCCGGGG AAACGGAGGA 
AGAGGAAGAA TGTTTATAGA GGGATACGTA AGCGTCCATG GGGAAAATGG 
GCGGCTGAGA TTCGAGATCC ACGAAAAGGT GTTAGAGTTT GGCTTGGTAC 
GTTCAACACG GCGGAGGAAG CTGCCATGGC TTATGATGTT GCGGCCAAGC 
AGATCCGTGG TGATAAAGCC AAGCTCAACT TCCCAGATCT GCACCATCCT 
CCTCCTCCTA ATTATACTCC TCCGCCGTCA TCGCCACGAT CAACCGATCA 
GCCTCCGGCG AAGAAGGTCT GCGTTGTCTC TCAGAGTGAG AGCGAGTTAA 
GTCAGCCGAG TTTCCCGGTG GAGTGTATAG GATTTGGAAA TGGGGACGAG 
TTTCAGAACC TGAGTTACGG ATTTGAGCCG GATTATGATC TGAAACAGCA 
GATATCGAGC TTGGAATCGT TCCTTGAGCT GGACGGTAAC ACGGCGGAGC 
AACCGAGTCA GCTTGATGAG TCCGTTTCCG AGGTGGATAT GTGGATGCTT 
GATGATGTCA TTGCGTCGTA TGAGTAAAAG AAAAAAAATA AGTTTAAAAA 
AAGTTAAATA AAGTCTGTAA TATATATGTA ACCGCCGTTA CTTTTAAAAG 
GTTTTTACCG TCGCATTGGA CTGCTGATGA TGTCTGTTGT GTAATGTGTA 
GAATGTGACC AAATGGACGT TATATTACGG TTTGTGGTAA AGAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT3G16770.1 [+] show detail - ethylene-responsive element binding protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.7e-11
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.7e-11
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.6e-16
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.5e-23
superfamily DNA-binding, integrase-type 1.3e-24
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.171
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.1e-36

See the detailed result >

AT3G16770.1

Model type
Protein coding
Short Description
ethylene-responsive element binding protein
Curator Summary
Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.
Computational Description
ethylene-responsive element binding protein (EBP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1); Has 5957 Blast hits to 5752 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5929; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-F08 introduced

  • F22110 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found