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RAFL04-13-G17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00295)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-G17 - full reading 
ATCATCATCA CCCACAGCAC AGAGACACAC ACAAAAAACC CATAAAAAAA 
TATGGCAAAT ATCTCCAGTA TTCACATTCT CTTCCTCGTG TTCATCACAA 
GCGGCATTGC TGTTATGGCC ACAGACTTCA CTCTAAGGAA CAATTGCCCT 
ACCACCGTCT GGGCCGGAAC TCTCGCCGGT CAAGGACCCA AGCTCGGCGA 
TGGAGGATTT GAATTGACTC CAGGTGCTTC CCGACAGCTC ACGGCTCCTG 
CAGGATGGTC AGGCCGGTTC TGGGCTCGTA CAGGCTGCAA CTTTGACGCC 
TCCGGAAACG GTAGATGTGT AACCGGAGAC TGTGGCGGTC TAAGATGTAA 
CGGCGGCGGA GTTCCTCCCG TCACTCTGGC TGAATTCACT CTAGTAGGCG 
ATGGCGGCAA AGATTTCTAC GATGTGAGCC TCGTAGATGG TTACAATGTC 
AAGCTGGGGA TAAGACCATC CGGAGGATCG GGAGATTGCA AATACGCAGG 
CTGTGTCTCT GACCTCAACG CGGCTTGCCC CGACATGCTT AAGGTCATGG 
ATCAGAACAA TGTCGTGGCC TGCAAGAGTG CCTGTGAGAG GTTTAATACG 
GATCAATATT GCTGCCGTGG AGCTAACGAT AAGCCGGAAA CTTGTCCTCC 
CACGGACTAC TCGAGGATTT TCAAGAACGC TTGCCCTGAC GCCTATAGCT 
ACGCTTATGA CGACGAAACG AGCACCTTCA CTTGTACCGG AGCTAACTAC 
GAAATCACTT TCTGCCCTTA AAAACCGAAG CTTCGAGTTA GATACAGTCG 
GGTTTAATTA TCTCTCACGT TTCTTTTGCT TATTATGTAC GGAAAGATAA 
ATAAGGAAAG CTGATGACTA TGAATCATCG TCTTCCACTT TTAAGCTTTT 
TTAGTGAGTA TTAGTCAGTT GTTACACCCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G75040.1 [+] show detail - pathogenesis-related gene 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Thaumatin, pathogenesis-related 7.3e-27
FPrintScan Thaumatin, pathogenesis-related 7.3e-27
FPrintScan Thaumatin, pathogenesis-related 7.3e-27
FPrintScan Thaumatin, pathogenesis-related 7.3e-27
FPrintScan Thaumatin, pathogenesis-related 7.3e-27
FPrintScan Thaumatin, pathogenesis-related 7.3e-27
superfamily Thaumatin, pathogenesis-related 3.8e-125
PatternScan Thaumatin, conserved site 0
HMMPIR Thaumatin, pathogenesis-related 3e-131
HMMPfam Thaumatin, pathogenesis-related 5.4e-90
HMMSmart Thaumatin, pathogenesis-related 2.1e-163
Gene3D Thaumatin, pathogenesis-related 2.1e-77
ProfileScan Thaumatin, pathogenesis-related 49.685

See the detailed result >

AT1G75040.1

Model type
Protein coding
Short Description
pathogenesis-related gene 5
Curator Summary
Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.
Computational Description
pathogenesis-related gene 5 (PR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1613 Blast hits to 1588 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 84; Plants - 1422; Viruses - 4; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-G17 introduced

  • F22541 - Specific phenotypes were NOT observed.
  • F27425 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found