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  3. RAFL04-13-H08

RAFL04-13-H08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00407)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-H08 - full reading 
AAAAACACTT AACCAAGCAA ACAACAAATG GCTCTTTCAA TCGTTCTTCT 
TCCCTTCATT CTCATTCTCA TACCGACTTT TCTCAGTTCG GTTTTCGCCG 
TTTCACCACT CAAAACTGAT ACGTTAAAAC CGGGGCAGCA GCTCAGAGAC 
TGGGAGCAGT TGATCTCTGC GGATGGTATC TTCACTCTCG GATTCTTTAC 
ACCTAAAGAC TCATCTACTT CCGAACTCGG GTCAGCTGGT CTTAGATATC 
TTGGTATTTG GCCTCAAAGT ATTCCAATAA ATCTAGTTTG GGTGGGTAAC 
CCAACCGAAT CAGTTTCTGA TTCATCTGGT TCTCTATCCA TTGACACCAA 
TGGGGTTCTA AAGATAACAC AGGCAAACGC TATTCCAATC TTGGTGAACC 
AAAGACCAGC CGCGCAGCTT TCATTGGTCG GGAATGTGTC TGCCATTTTA 
CTCGATACCG GGAACTTTGT GGTCCGAGAG ATCAGGCCAG GAGGAGTTCC 
GGGTCGTGTT CTATGGCAAA GCTTTGACCA TCCCACAAAC ACATTACTTC 
CCGGGATGAA GATTGGGTTT AACCTAAGAA CCAAGAAAGA AGTATCAGTT 
ACGTCTTGGA TAACTGACCA AGTCCCAGTC CCAGGAGCAT TCAGACTAGG 
ACTAGACCCA TCAGGAGCTA ACCAGTTACT CGTCTGGCGC CGCGGGGAAA 
TCTACTGGTC CAGTGGAATC TTGACGAACA ATGGAAGCTC TCATTTGAAC 
TTAGAAGTAT CCAGACACTA CATTGATTAT GAATTCAAGT TCGATTCAAA 
TAAGTACATG AAGTACTTCA GCTACTCAAT CAAGAAAGCT AATAGTTCGG 
TCTTTTCCAG CTGGTTCTTG GATACTCTAG GCCAAATCAC TGTAACCTTT 
TCTCTCAGCA GTAACAATAG CAGCACCTGG ATTTCCGAAA GCAGTGAACC 
CTGCAAGACG GATTTAAAGA ACAGTTCAGC AATCTGCATC ACGGAGAAGC 
CAACGGCTTG TAGGAAAGGG TCAGAGTATT TCGAACCCAG AAGAGGATAC 
ATGATGGAAA ATAATACCGG TTATTATCCA TTTTACTATG ACGATAGTTT 
GAGCGCTGGT CTTAGCGACT GTCATGGAAC CTGCTGGAGA AACTGTTCTT 
GCATAGCTTT CCAAGCCTTT CCTGATGGAT GCCAATATTG GGAAAAAGGA 
TCAAAGTTTG TTCCTTATGA TAGCTTCAAC TCCAATTTAG TAACTTATGT 
TCTTGATTCT GTAAAGTGAT GTGTGGTTGT AACTTGAACG AGCAATTATG 
TAACCAGACT AGTATCAGTA AAGGGGTTTA TTAAGAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT5G18470.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Curculin-like (mannose-binding) lectin 4.3e-20
superfamily Curculin-like (mannose-binding) lectin 4.7e-16
HMMPfam Curculin-like (mannose-binding) lectin 1.4e-25
ProfileScan Curculin-like (mannose-binding) lectin 10.945

See the detailed result >

AT5G18470.1

Model type
Protein coding
Short Description
Curculin-like (mannose-binding) lectin family protein
Computational Description
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G67520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-H08 introduced

  • F02045 - Specific phenotypes were NOT observed.
  • F05706 - Specific phenotypes were NOT observed.
  • F06214 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / cauline leaf::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism
  • F18304 - Specific phenotypes were NOT observed.
  • F20014 - Specific phenotypes were NOT observed.
  • F28511 - Specific phenotypes were NOT observed.
  • F30010 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found