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RAFL04-13-J11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07154)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-J11 - full reading 
ATCAATACAA ACTTAGTAGT GTATTCTTTA TACGTATAAT AACATCCCTT 
GTGATCAAAC AAGTAAACCA TTCAAAAGAT GAAAGGAAGA ATTTTGATTT 
TGAGTTTGCT CATAATGAGT CTGGTCATGG CACAAGTTCA AGTAGAAGCA 
AAGATCTGCT GCCCTTCCAA CCAAGCTAGA AATGGCTATA GTGTATGCCG 
TATAAGGTTT TCCAAGGGAA GGTGTATGCA AGTGAGTGGA TGCCAAAACT 
CTGATACATG CCCTCGAGGT TGGGTAAACG CCATTCTCGA AAACTCAGCT 
GATGCTACCA ATGAGCACTG CAAGTTAGGG TGTGAAACTT CTGTGTGTGG 
TGCCATGAAC ACTCTCCAGA ACTCTGATGC AAGTGAAATT GTGAATGGAG 
CGTCGGAACA ATGTGCCAAG GGATGTTCTA TTTTCTGTAC CAAGAGCTAT 
GTAGTCCCAC CTGGGCCGCC TAAACTGTTG TAATGGTCGT ATATGTGAAA 
AAACAAATGC TAGACTCTTG CTATTCTGGT TTGTGTGTGT GTGTGTGCAT 
GTGTCGTAGA AGGTTTGTTC GATCACTAGA TTGTACATGC CCTCTACTTC 
CTATAACCTA AATAAAGAGT TAAACGTACG TGTCTTTTAA AAAAAAAAAA 
AAAAAAAAAA AAAAGAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G72260.1 [+] show detail - thionin 2.1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Thionin 7.4e-06
HMMPfam Thionin 2.8e-14
superfamily Thionin 7.2e-12
PatternScan Thionin 0

See the detailed result >

AT1G72260.1

Model type
Protein coding
Short Description
thionin 2.1
Curator Summary
Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.
Computational Description
thionin 2.1 (THI2.1); FUNCTIONS IN: toxin receptor binding; INVOLVED IN: response to jasmonic acid stimulus, defense response, jasmonic acid mediated signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: Plant thionin (TAIR:AT1G66100.1); Has 198 Blast hits to 198 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-J11 introduced

  • F11744 - Specific phenotypes were NOT observed.
  • F12824 - Specific phenotypes were NOT observed.
  • F21123 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found