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RAFL04-13-N12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00312)

full reading [+] show sequence

Nucleotide sequence: RAFL04-13-N12 - full reading 
GCTCTTTTCT TAATTTTACT GCTAAATAGT AGTGTTTACT GTCTTCAGCC 
GCCGTCGCCG GATTCCATTA TCGAAGGCGA CGGAAGCAGT ATCTTAGGTT 
TTGTCCGACG AAGCTCCGTT TGATTGTTAT CGGTTCCGTT GTATTCGTCG 
ATCTTCCATT TTCGCATTTG TTTTCTATAT CCGAAGATGG GAAGCAGTCC 
AGCTCCGTTT GCCGATATTG GCAAGAAAGC CAAAGATCTC CTAAACAAGG 
ATTACATTTT TGACCACAAG TTTACTCTCA CAATGCTGAG TGCTACAGGA 
ACGGAATTTG TGGCTACTGG TTTGAAGAAG GATGATTTCT TTTTTGGCGA 
TATAAGCACA CTATATAAAG GTCAAAACAC CATTGTTGAT CTGAAAATCG 
ACAGCCACTC TAGTGTGTCG ACGAAAGTAA CTCTCAAAAA TCTCTTGCCA 
TCCGCTAAAG CTGTAATTAG TTTCAAAATA CCTGATCACA AGTCTGGCAA 
GCTGGATGTG CAATATGTTC ATCCTCATGC TACGCTCAAT TCCAGCATTG 
GCCTCAACCC AACTCCTCTG TTAGATCTAT CAGCAACTAT CGGAAGCCAG 
AATGTTTGCC TTGGTGGTGA AGTCAGTTTC GACACAGCTT CATCATCACT 
AACAAAGTAC AATGCAGGGA TTGGTTTCAA CAACCAAGGC GTCTCTGCTG 
CACTCATACT GGAGGATAAA GGGGAGAGTC TGAGAGCTAC TTACGTCCAC 
ACAGTGAACC CAACCACATC CTTTGGTGCA GAACTGATCC GTCGCTTCTC 
CAATTATAAC AACAGCTTCA CCGTCGGAAG CTCTCACTCT GTGGATCAAT 
TCACAGTGGT TAAGACCAGA TTTTCTAACA GTGGGAAAGC AGGGATGGTG 
GTCCAGAGAG AATGGAGACC GAAGTCGCAC ATCACTTTCT CAGCTGAGTA 
TGACTCAAAG GCTGTGACCT CTTCACCAAA GCTTGGTCTC GCCCTCGCCC 
TCAAACCATA AAACAAGAAA AGAGCTCTTA TCAGTTTGGA AAACACAAAC 
TAAACAATTC AATTTTTCAC CAAGTGCTAA AAAAATCACC CCCAAACGAA 
CGGTTTGTAG GGTTATTGAA TCACTTTTGC ATTAATATTT GTTTTTTCAA 
AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT5G57490.1 [+] show detail - voltage dependent anion channel 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1, 1.6e-152
HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1.6e-152
HMMPfam Porin, eukaryotic type 1e-58

See the detailed result >

AT5G57490.1

Model type
Protein coding
Short Description
voltage dependent anion channel 4
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 2 (TAIR:AT5G67500.1); Has 864 Blast hits to 864 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 143; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-13-N12 introduced

  • F14144 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found