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RAFL04-14-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00363)

full reading [+] show sequence

Nucleotide sequence: RAFL04-14-C12 - full reading 
TCCCCTAATT TCGCTTCGAA TTCAAAAGCC CTAATTCGAA AATTCCCATT 
TCTCAAGGTT TTTAAAAGAG TATTGCAAAG ATGTCTTCTG ATTCGTCCCG 
GGAAGAGAAT GTGTACTTGG CCAAGTTAGC CGAGCAAGCT GAGCGTTACG 
AGGAAATGGT TGAGTTCATG GAGAAAGTTG CAAAGACCGT GGAGACCGAG 
GAACTTACTG TTGAAGAGAG GAATCTCTTG TCTGTTGCTT ACAAGAACGT 
GATTGGTGCT AGGAGAGCTT CTTGGAGGAT TATCTCTTCC ATTGAGCAGA 
AGGAAGATAG CAGGGGCAAC AGTGATCATG TTTCGATTAT CAAGGATTAC 
AGAGGCAAGA TTGAAACTGA GCTCAGCAAG ATTTGTGATG GCATTTTGAA 
CCTTCTTGAG GCTCATCTCA TTCCTGCTGC TTCTTTGGCT GAGTCCAAAG 
TTTTTTACCT GAAGATGAAG GGAGATTATC ATCGGTACCT TGCTGAATTC 
AAGACTGGTG CTGAGAGGAA AGAAGCTGCT GAGAGCACTC TTGTTGCCTA 
CAAGTCTGCT CAGGATATTG CTCTTGCTGA TCTGGCTCCC ACTCACCCAA 
TCAGACTGGG GCTTGCTCTT AACTTCTCTG TTTTCTACTA TGAGATTCTC 
AACTCATCTG ATCGTGCGTG TAGTCTCGCA AAGCAGGCTT TTGATGAGGC 
AATCTCGGAG CTAGACACAT TGGGAGAGGA ATCATACAAG GACAGTACAT 
TGATCATGCA GCTTCTCCGT GACAATCTCA CCCTCTGGAC TTCTGACCTC 
AATGACGAAG CTGGTGATGA TATCAAGGAA GCCCCGAAAG AGGTGCAGAA 
AGTTGATGAA CAAGCCCAAC CACCACCTTC GCAGTGATAA AATCAGATCC 
ATGGAATGAT TTGCAGACAA AAAAATATAT GGCTTGGTTC TGTGTTTTTA 
AACAGAAAAA AACCTTGTAG TTTCCTTAAA CATGGGCTGT AGTTTCCTTA 
AACATGGATT TGTAGTAGTA ATTGTAGCTG CATGATTTGG TTATCGATGG 
TTAAAACAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT5G16050.1 [+] show detail - general regulatory factor 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 14-3-3 protein 1.9e-205
Gene3D 14-3-3 protein 3.2e-106
Coil coiled-coil 0
superfamily 14-3-3 protein 2.9e-105
HMMPfam 14-3-3 protein 1.5e-112
PatternScan 14-3-3 protein 0
PatternScan 14-3-3 protein 0
FPrintScan 14-3-3 protein 2.1e-88
FPrintScan 14-3-3 protein 2.1e-88
FPrintScan 14-3-3 protein 2.1e-88
FPrintScan 14-3-3 protein 2.1e-88
FPrintScan 14-3-3 protein 2.1e-88
FPrintScan 14-3-3 protein 2.1e-88
HMMPIR 14-3-3 protein 8.2e-177
HMMSmart 14-3-3 protein 6.6e-209

See the detailed result >

AT5G16050.1

Model type
Protein coding
Short Description
general regulatory factor 5
Curator Summary
Encodes GF14 upsilon chain, a 14-3-3 gene family member.
Computational Description
general regulatory factor 5 (GRF5); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-14-C12 introduced

  • F09222 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds