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RAFL04-14-C14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00279)

full reading [+] show sequence

Nucleotide sequence: RAFL04-14-C14 - full reading 
ATAACTCACA CTCTCTCTTA TCTCCTTTCC TTTCATTGTA GTTAACGAAA 
AGATTACGAT AATGGCAACA TCAGCTATCC AGCAATCCTC CTTCGCCGGC 
CAAACGGCTC TCAAGCCCTC CAACGAACTC CTCCGCAAGG TTGGTGTATC 
CGGTGGTGGC CGTGTGACCA TGCGTCGTAC CGTCAAGTCT ACTCCTCAAA 
GCATCTGGTA CCAAATCCAC TCTCTCTGGC TCTTACCTAA CCTATCATTA 
ACTTTTCAGA TATGTCTAAT CACCAAATTC ATCTTGTAAC AGGTACGGAC 
CAGACCGTCC CAAGTACTTA GGACCATTCT CGGAGAATAC ACCGTCCTAC 
CTAACCGGAG AATACCCCGG AGACTACGGC TGGGACACCG CTGGACTCTC 
GGCTGACCCG GAGACATTCG CTAAGAACCG TGAGCTTGAA GTAATCCACA 
GCAGATGGGC TATGTTGGGT GCTCTCGGAT GCACATTCCC TGAGATTCTC 
TCCAAGAACG GTGTTAAATT CGGAGAAGCC GTGTGGTTCA AGGCAGGTTC 
TCAGATTTTC TCAGAAGGAG GTCTTGATTA CCTCGGAAAC CCTAACTTGA 
TCCACGCGCA AAGCATCTTA GCCATCTGGG CTGTTCAAGT TGTGCTCATG 
GGGTTCATTG AAGGCTACAG AATCGGAGGT GGACCTCTCG GAGAAGGGCT 
TGACCCGCTT TACCCCGGAG GTGCGTTCGA CCCATTGAAC TTGGCTGAGG 
ATCCAGAGGC TTTCTCTGAG CTGAAGGTGA AGGAGCTTAA GAACGGTCGT 
CTTGCCATGT TCTCTATGTT TGGATTCTTT GTCCAAGCCA TTGTTACTGG 
TAAAGGTCCC ATTGAGAACT TATTTGATCA TTTGGCTGAT CCTGTGGCTA 
ACAACGCCTG GTCTTACGCT ACTAACTTTG TCCCCGGAAA TTAATTATCT 
TATGTATTTG CTTCATAATC TCTCTGCTTT GTAAAGTCGT GAATGTACTT 
ATTGGTGTTT TATGTGAGTT TGGTACTTAA GAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT2G05100.1 [+] show detail - photosystem II light harvesting complex gene 2.1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chloroa_b-bind 1.6e-49
HMMPanther Chlorophyll A-B binding protein 3.3e-170
HMMPanther Chlorophyll A-B binding protein 1.7e-11
superfamily Chlorophyll a-b binding protein 8.6e-80

See the detailed result >

AT2G05100.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene 2.1
Curator Summary
Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
Computational Description
photosystem II light harvesting complex gene 2.1 (LHCB2.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to salt stress, response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.2 (TAIR:AT2G05070.1); Has 2375 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2059; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-14-C14 introduced

  • F07517 - Specific phenotypes were NOT observed.
  • F17921 - seed::increased size
  • F20342 - Specific phenotypes were NOT observed.
  • F23448 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found