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  3. RAFL04-14-D08

RAFL04-14-D08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00484)

full reading [+] show sequence

Nucleotide sequence: RAFL04-14-D08 - full reading 
AAGGAAAAGG CAATGCAAGA AGAAGCTTAA ATCTCTCTTC TCTGCTCCTG 
AAGTCTGTTC ATGGCGATGT CGGGAACTTT CCATTTGACT TCTGACTATG 
TCCCTGGTTA CACACTTTCA GACAGCCGTT GCTTCTTTAA CTCTGCTGTT 
TCAAGAAGAA CACTTGCCAT ATTACCTTGC TCTTCCTGTC TCGATCACAA 
GAATGGGCGT CTGAAATCTG TCCCCAATAG AAGTTCTTTT GTGTGCCGAG 
CAAGTTCTGG CGGCTATAGG AGAAATCCTG ATTTCTCAAG ACTTAATAAG 
CATGGTTACC GGGGAAACAA CAGGCAAAGC GGAGGGAGAG AAGATTTTGA 
TATCGAAAAC TCTGATATGT TGTCTTCAAG AAATGGGCCT TTATTCAACC 
TGTCTAGTTC CCCCAAATTC CAAGCTACCT CATCCCCTGG ACCTAGAGAG 
AAAGAGATCG TGGAGCTTTT CAGAAAGGTT CAAGCTCAGC TCCGAGCTCG 
TGCTGCAGCA AAGAAAGAAG AAAAAAAGAT TGAAGAAGCT TCTAAAGGGC 
AGGGAAAAGA AAGTGAAACT GTTGACTCTC TTCTTAAGTT ACTAAGGAAG 
CACTCGGGAG AGCAAAGCAA GAGGCAAGTT AGCAAATTTA GCAGCCAGGG 
AGAAGTACAA GGAGATACTG TTGACAAACA AGATCGCACC GGAAATCTTG 
TCACTTCAGG GAACAAAGAT AATAATGCAT CATCCTTTAC CAGACCAACA 
TCAAGCTTCA GAAGAAAGTC GCCAGTACCA AGATCTCAAT CACCGCCAGC 
TTATTCTAGC GAGGCAACTT TTGATCAATC ATCAAGTTAC AGTGTAACCT 
GGACCCAGAA GAAGGATACA GTAGAGTTGC ATGATGAGCC TGAACATGAG 
CCTGCGTATG AGCATGAGCA TGAGCCTGAA AATGAGTCAG AACCTGGGCC 
TGTGACAACT ATGCTTGAAC CAGATTCAGA GCTGAAACCA GAGTCATCAT 
CATTTTATCA AGAGGAGGAG GATGATGATG TTACTTTTGA TGTGTTATCA 
CAGGATGATG GTATTTTAGA TGTGTTATCA GATGATGATG AGTCTCTCGA 
TGATGCTGAT GAAGATAGTG ATGAAGCTGA GGAAGAAGCC GTGAAAGACT 
TGAGTGAATT GAAGCTGGTC GAACTTAGAG GCATAGCAAA GTCACGGGGA 
CTAAAAGGGT TGTCAAAGAT GAAGAAAGCC GAATTAGTGG AGTTGCTTGG 
TAGTGATTCC AGCTGAACCT TGCTCTAGTA TGCACCAGTT AAAATGAGTT 
ACTTTCTCTG TATTTTGTTT GTTTGGAAAA TGCTGGCTTT GATGTTCTTG 
ATTTACTAGG ATTACCTTCT TCTCTTTTAA GTTATTATTA TTACACTGAT 
GTACCTTGTC AACTACAGTT TTCAGGACGC ATTATTTACT GTTCAATCAT 
ATGGATTTTC AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G06190.1 [+] show detail - Rho termination factor
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PLASMA MEMBRANE PROTON-ATPASE 3.9e-77
HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 3.9e-77
Coil coiled-coil 0
HMMPfam Rho termination factor, N-terminal 2.7e-07

See the detailed result >

AT1G06190.1

Model type
Protein coding
Short Description
Rho termination factor
Computational Description
Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-14-D08 introduced

  • F07201 - Specific phenotypes were NOT observed.
  • F12812 - rosette leaf::decreased width / stem::decreased thickness / fruit::decreased length / stem::abnormal / rosette leaf::desaturated green / rosette leaf::abnormal / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism

Mutant lines with disrupted or induced

4 mutant lines found