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  3. RAFL04-14-F04

RAFL04-14-F04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00400)

full reading [+] show sequence

Nucleotide sequence: RAFL04-14-F04 - full reading 
GATTCTGGGT CTGTTGAAAA TCAAAATTTT CTTGAGAACT TTTTTTGAAG 
AGTTATGATT GCATTAGCTG CTTCTTCGTT GGGGAATACA CCGATTGCTT 
CGTTTAACCG TCATTTTAGA TTCCGGTTAC ATCCACGAAA CCCTCTGATA 
CAAGCAGCGG TTTCACCTTC GTCTTCTTCT TCTTCTCCTA CTGCTTCATC 
TGGCTTTGAT TTGAGTTCTC TCGAATCCGC CATTAACAAG AAAGATAGTA 
ATGGTGTTAA GGAAGCTCTC GATAAATTGA GTGAAGAAGG TTGGGCTAAG 
AAATGGAGCT CCCAGCCGTA TCTTTCGCGC CGTACGACAT CACTGCGGGA 
GCTGACAACT CTCGGTATCA AGAATGCAGA GACTCTGGCC ATCCCTAGTG 
TCAGGAACGA TGCGGCTTTT CTTTTCACAG TAGTCGGATC AACTGGGTTC 
ATAGCTGTAC TTGCCGGCCA ACTTCCCGGG GACTGGGGAT TCTTTGTGCC 
TTACTTAGTT GGGAGCATTT CGTTGGTAGT TTTAGCCGTG GGAAGCGTTT 
CACCAGGGCT TCTTCAAGCT GCGATTTCCG GGTTTTCGAC GTTCTTCCCT 
GATTATCAAG AACGAATTGC TGCACATGAA GCAGCCCACT TCTTAGTGGC 
TTACTTAATC GGGCTTCCAA TCCTCGGGTA CTCGTTAGAC ATCGGTAAAG 
AACATGTCAA TCTCATTGAC GAGAGACTAG CTAAACTAAT ATACAGCGGC 
AAGCTTGACT CAAAGGAGCT CGATAGGTTG GCTGCTGTTG CAATGGCTGG 
ACTTGCCGCC GAGGGTCTGA AGTATGACAA AGTAATTGGC CAATCTGCAG 
ATCTCTTCTC TCTTCAGAGA TTCATAAACA GAAGCCAACC CAAAATCAGC 
AACGAGCAGC AGCAAAATCT AACAAGATGG GCTGTTCTTT ACTCTGCTTC 
TCTTCTCAAA AACAACAAGA CCATCCATGA AGCTCTAATG GCTGCAATGT 
CCAAAAATGC ATCTGTTCTT GAATGCATTC AAACCATTGA GACAGCTTCC 
TAGATGAACA ATCTCTGTTA TCTCTTTAAT CGATACAACT ACGTCCCATA 
ACAACACTCA ATTGTTTCAC ATGAACTTCC ATATCTTTTA TATATATATA 
TAAAGACACA AAAGTTACAG ACTTCCAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT2G21960.1 [+] show detail - unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G21960.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-14-F04 introduced

  • F10627 - Specific phenotypes were NOT observed.
  • F12128 - seed::increased size / seed::increased length
  • F16510 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found