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  3. RAFL04-14-J20

RAFL04-14-J20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00500)

full reading [+] show sequence

Nucleotide sequence: RAFL04-14-J20 - full reading 
AGGCAGTGTG TTTTCTTACA GCGAAGAGCC CCAAAGAGAA GAACAAAATT 
TCGAAAATAG AGAAAGAGAA GAAGTTGACG ATGGATTCAA AGGCGAAGCA 
GATGATTCTT TCAGCTCTCT GCAAACACTT CTCTTTGGAT CCTGAACCTT 
TTGTGGGCGG AGCGGGTGAA AGTGATATCA AGACACTTTA TTCTAATGTA 
TTGAAGGCAT CTGGAAAGGA AGTATCTGCA CAAAACAACG ATGTTTTGAA 
GTGGCTAGAT TTTGCGGAAG GTTTCTCTTC AGATTCAAAG GATTGGTTTT 
CAGCTCTTGA AAAGTTGAAT TTAGAGTTAG CTACCAAGTC AGTGCTCTTG 
GGAAACGGAT TGACGCCATC GGCAGCTGAT GTTGCTGTGT TTTCAGCTCT 
GCATTCTTCA GTGCTTGGCC TCTCAGATTC AGACAAGGAG AAAGTACCAC 
ATGTCATAAG ATGGGTGAAT TACATCCAGA ATAAAGAAGA GTTGTCGACA 
TTATTTGCAC CAATACCTGT GAAGCTACCA GAATTTAGCT TCGAGGTACC 
AAAACCTGCC ATTAAGGTGG AAACAAATTC TAATTCAAAA AAAGCTGCAG 
AAGGTGTAAA GCCTGTTGAC AAGCCAGATG TGCAGCCGCA GCTGGGCACA 
AAGAAAACTG AGCCAGAGGA ACCAAAGAAA AATGCAGCAA AAGAGAAGGA 
TGCCAAAAAG GAAAAGAAGA AGCCTGCTGA ACCAGAACCA GCTAAGAAAG 
AGGCAGAGCT TAGTGTCAGT TTGCTTAACA TTCAGGTTGG TCTAATTCGT 
AAAGCATGGA AGCACCCATC GGCGGATAGT TTGCTGGTGG AAGAAATAGA 
TGTCGGGGAG GATAAAGTGA GACAAGTAGT TAGTGGCTTA GCAAAGTTCT 
GCAGTCCTGA GGATCTAACG AACCGCCTCG TTGCACTCAT CACAAATGTC 
AAACCTGGAA AGCTAAGAGA TGTAATGTCA CAAGGACTGG TTCTTTGTGC 
TTCAAGTGAA GATCACTCGG TGGTAGAGCC GTTGCTACCA CCTGCTGGTG 
CTAAACCAGG AGAGCGTGTT TCATTTTCAG GGATTGAAGG AAAGCCAGAA 
GATGTACTGA ACCCAAAAAA GAAGCAACTA GAGAAGATAA CACCGGGTCT 
CTACACTGAT GAAAATGGCG TAGCCACATA CAAAGGCATA CAATTCATGA 
CCTCGGCTGG ACCTTGCACT TCCAGCATCC CCAAGGCGAC CATCAAGTAG 
TAAACTCAGT TGATACTTCT CTCCTCTACT CTAGCGTTTT TCTTTGATAT 
TCGCAAACTC AGTTGGAAAA AGAAAAGATG TTCTTTTTGT CACAATTCGA 
ATTAATCTAA AAACTTTCTT CTCAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT2G40660.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam tRNA-binding domain 1.1e-25
Gene3D Nucleic acid-binding, OB-fold 1.3e-46
HMMPanther ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE I 2.5e-20
HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 2.5e-20
superfamily Nucleic acid-binding, OB-fold-like 2.7e-46
ProfileScan tRNA-binding domain 29.542

See the detailed result >

AT2G40660.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; INVOLVED IN: tRNA aminoacylation for protein translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 6072 Blast hits to 6060 proteins in 2115 species: Archae - 244; Bacteria - 4267; Metazoa - 483; Fungi - 217; Plants - 163; Viruses - 1; Other Eukaryotes - 697 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-14-J20 introduced

  • F10449 - Specific phenotypes were NOT observed.
  • F17333 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found