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  3. RAFL04-14-K03

RAFL04-14-K03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda16968)

full reading [+] show sequence

Nucleotide sequence: RAFL04-14-K03 - full reading 
GGGTCTCTTT CTCTCTCTGT CTCTAGTCTC TACTCTCGAA CGGGCTAAGC 
TCAGATCATT ACAAGATTCG CTTTTGTGCT GAACTTGGTC CCATTCATTA 
GTTATTTGCT TAAAGACAAC ATTTTTATAT GCTTCCGTTA GCTAAATCCA 
TCACTCCCCC CTTCAATCAT TTCCCTGCTC TGCTGGCCCC AGAAACAGCT 
TGCTAGGATT CACTACGACG TCGTTTCGGG TTCGTCTCCA GCTGTGGATA 
ATGGCTATTC TCTGAAATTG ATTCTATTCA CTATTTTGTT ACTGGGGATT 
TTCTCAGCAA ACCAAAACAG GATTTATTTT TTCTGGGGAT TTCTGAGATT 
GGAAGAAAAT GTTCAGCTTT TCAAAGAGGC GCATGAGACT TGGCAGAGTT 
AAGAAGGTAC AGCTCTCGGA TTCTGTTCAA GGATATAAGA GTCCTTTACG 
AGTGACCAAA CGCGCTGATA GCTCTAGTAA TGAAGCTGCT GTTGCTGCAA 
CTAGTTATTC TGATGAACTT GATTTCCAGC CTTCATCAGG GAATTCCGAA 
AATTGGATGG TGTTATCGGT TAATGGCGAA AAACCCGCTC CACGCTTTAA 
TCATGCAGCG GCGACTATTG GGAACAAAAT GATAGTAGTT GGTGGAGAGT 
CTGGTAGTGG CTTGTTGGAT GATGTACAGG TGCTTAACTT TGATTCATGT 
ACATGGTCCA CCGCATCTTC AAAAGTTTAC TTATCGCCGA GTAGTCTTCC 
TCTCATGATC CCTGCTTGGA AAGGCCATTG CTTGGTCTCT TGGGGTAAAA 
AAGTGCTGTT GGTGGGTGGA AAAACAGATC CTAGCAGTGA TAGAGTTTCA 
GTGTGGGCAT TTGATACTGA TTCGGAATGC TGGTCACTAA TGGATGCAAA 
AGGAGACTTA CCGGTCAGTC GCAGCGGTCA CACAGTGGTG AGGGCTAGTT 
CGGTATTGAT ACTATTCGGT GGTGAAGACT CTAAGAAGAG GAAACTAAAC 
GATCTTCATA TGTTTGATCT CAAATCATCC ACATGGCTTC CTCTTAATTG 
CACAGGAACA CGGCCGTGTG CAAGGTCACA TCATGTAGCC ACGTTATTCG 
ACGACAAAAT TCTGTTTGTG TTTGGAGGTT CGGGCAAGAA CAAAACACTA 
AATGACTTAT ACTCACTCGA CTTTGAAACG ATGGTATGGT CAAGAATAAA 
GATAAGAGGA TTTCACCCAT CACCAAGAGC GGGTAGTTGT GGAGTTCTTT 
GCGGTACTAA ATGGTATATA ACCGGAGGAG GAAGCAGAAA GAAGAGACAT 
GCGGAAACAT TGGTCTTCGA TATCCTTAAG GTCGAGTGGT CTGTAGCAAG 
CATCTCCTCT CAATCTTCTG TCACATCCAA CAAGGGATTT AGTCTAGTTC 
TTCTGCAACA CAAGGATAAA GATTTCCTTG TAGCTTTTGG AGGAACGAAA 
AAAGATCCTT CAAATCAGGT CGATGCTTTT ACCATTGACA AGAACAAGAG 
TGAATCACCA ACACATCCGC AAACAACTTC CAAGAAAAAC CCCGGCCGGT 
TACTGTTTGG AAAAAGATCT TCTTCCTCGG CAGTTTTAAC CTCTGATGAA 
TCGGTTAAAG CCTCTTCACA GAGGCTGATT GATTCAGTTG CCAGACAGAA 
ACTTGCTTCA GCCATTGAAG AGCATGGTGG CTCTGGTAGA AGGTCTTTAT 
CAGAGATTGC TTTCGGTGAT CATCGTAACC CACCTTCTGG AAATGTCTCT 
TTGCGTAAAC AGTTTAGCAC CGAAGAGGAA TACAGAGCGG TGATTGAACC 
CGCAAAGTGT TCAGAAGAAG ACATTTCCGT GCCTCCTCCG ACCACAGATG 
ACAATACTGG AGGAGCAAAG ATTACAGCAG AGAAAACACT TTCTATGGTT 
TCTGACCGTG AAATCTTAAG TCTCCAGAAG CAATGCTCTG AAACATATCC 
TTTAGAAAAC GTTGATGGCG CCTTGATATT CCAAGAAATG GATAATATCA 
ACTTTGCAGG ATCAGCGTCC TCATCGAGCG TGTACCAATT CCATGAAGCG 
AAAATGACGG CTCTTATAAG AAGAAATGGG ATTCTGGAAG GGCAGTTAGA 
AGCAGCATTG GCGGGAAGAG AGGCGGCTGA GAGGAATGTG TCGGTTGCGT 
TGAGGAGCAA ACAAGAGACT GATAAAAAGT TATCTGACGC CATGAGAGAT 
GTTGAATTGC TTAAGGAGAA GCTGACCGGG TTAGAGCTCG CTCAAGAGGA 
AGCTAATAGT TTGTCAAACA TGGTTCACTC CGACAATGTC AGGCTTGAGC 
ATGATGTAGC GTTCCTCAAA GCTGTCCTAG ACGATACACA AAAGGAGTTG 
CATTCAACAA GAGGAGTTCT TGCAGGAGAA AGAGCAAGAG CGTTCCAGTT 
GCAGGTTGAA GTGTTTCATC TGAAGCAAAG ATTACAATCT CTAGAGAACA 
GAGCTGCTAC ACCCAGAAAG CCTTTCCATG TCTAAACACA GACCAGAGAC 
AACACGATAA CTTTTATGAC TTCCATTTTG TAGTACTCGA GACATGACTG 
AATTCATGTG TGTTGTGGAG TAATGTATAA TAGAAGTGAA TTCAGAAAAA 
AAA

Gene models with high sequence identity

  1. AT5G18590.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Galactose oxidase/kelch, beta-propeller 1.8e-38
Gene3D Kelch-type beta propeller 9.3e-43
HMMPanther RANGAP1-INTERACTING PROTEIN-RELATED 5.5e-227
HMMPanther KELCH REPEAT DOMAIN 5.5e-227
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
HMMPfam Kelch repeat type 2 0.00012
HMMPfam Kelch repeat type 1 1.9e-06

See the detailed result >

AT5G18590.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-14-K03 introduced

  • F23444 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found