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RAFL04-15-A03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00548)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-A03 - full reading 
AAAAAACCCT AGAAAAAATG GCAGGAACCG GAGTTGTGGC GGTGTACGGC 
GAAGGAGCCA TGACGGAGAC GAAACAGAAA TCTCCCTTCT CCGTGAAAGT 
TGGTCTCGCT CAGATGCTTC GTGGCGGTGT AATCATGGAT GTCGTCAACG 
CAGAGCAAGC TCGAATCGCT GAAGAAGCTG GCGCATGCGC CGTGATGGCT 
CTTGAACGTG TTCCCGCCGA TATTCGAGCT CAAGGCGGTG TTGCTCGAAT 
GAGCGATCCA GAGATGATCA AAGAAATCAA AAACGCCGTG ACGATTCCGG 
TGATGGCGAA AGCTAGAATT GGTCATTTCG TTGAAGCTCA GATCCTGGAA 
GCAATCGGAG TTGATTACGT CGACGAGAGT GAAGTTCTCA CTCTCGCCGA 
CGAAGATAAT CACATCAACA AACATAATTT CAAAATCCCT TTTGTTTGTG 
GATGTAGGAA TCTCGGTGAA GCTTTAAGGC GGATCCGTGA AGGAGCCGCC 
ATGATAAGAA CCAAAGGTGA GGCTGGAACT GGTAACGTTG TTGAAGCCGT 
TAGGCACGTG AGGAGTGTGA ACGGAGCTAT TCGGTTACTT AGAAGCATGG 
ACGATGACGA GGTTTTCACT TACGCGAAAA AGATCGCTGC GCCGTATGAT 
TTGGTTGTGC AGACTAAGGA GCTTGGGAGG TTACCGGTGG TTCAGTTCGC 
TGCTGGAGGA GTGGCGACGC CGGCGGATGC GGCGTTGATG ATGCAGTTGG 
GATGTGATGG AGTGTTTGTT GGGTCGGGTG TTTTCAAGAG TGGAGATCCG 
GTGAAGAGGG CTAAGGCTAT TGTTCAGGCG GTTACGAATT ATAGAGACGC 
GGCGGTGTTG GCGGAGGTGA GCTGTGGTTT AGGTGAAGCC ATGGTTGGTC 
TTAATTTGGA TGATAAGGTT GAGAGGTTCG CTAGTCGTTC TGAGTAACCA 
ATCAAATTTC AGATGTTTTT ATCCATAACG TTTGTCACTT TAATATGTAT 
CCACAAACCA ATATTCTCGA TTTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT2G38230.1 [+] show detail - pyridoxine biosynthesis 1.1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Vitamin B6 biosynthesis protein 5.6e-215
HMMPfam Vitamin B6 biosynthesis protein 5.2e-115
HMMTigr Vitamin B6 biosynthesis protein 2.8e-162
ProfileScan Vitamin B6 biosynthesis protein 169.552
HAMAP Vitamin B6 biosynthesis protein 49.776
PatternScan Vitamin B6 biosynthesis protein 0
superfamily Ribulose-phosphate binding barrel 3.4e-46

See the detailed result >

AT2G38230.1

Model type
Protein coding
Short Description
pyridoxine biosynthesis 1.1
Curator Summary
Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.
Computational Description
pyridoxine biosynthesis 1.1 (PDX1.1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: vitamin B6 biosynthetic process, response to absence of light; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 14 plant structures; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G01410.1); Has 4179 Blast hits to 4172 proteins in 1294 species: Archae - 234; Bacteria - 2657; Metazoa - 13; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-A03 introduced

  • F03401 - Specific phenotypes were NOT observed.
  • F05111 - Specific phenotypes were NOT observed.
  • F05749 - seed::increased size / seed::increased length
  • F08951 - Specific phenotypes were NOT observed.
  • F17222 - cauline leaf::desaturated green / stem::abnormal / stem internode::decreased length / fruit::abnormal
  • F18110 - Specific phenotypes were NOT observed.
  • F25714 - Specific phenotypes were NOT observed.
  • F28022 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found