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Full-length cDNAs
RAFL04-15-A14

RAFL04-15-A14

RIKEN Arabidopsis Full-length cDNAs

GATACAACAA GCTTCTCTCT CTGGTAGCCA TGGCTTCGGC TACTTTCTCT 
GTGGCCAAAC CATCTCTTCA GGGTTTTTCT GAGTTCTCAG GACTTCGAAA 
CTCCTCTGCT CTTCCCTTTG CCAAGAGATC TTCTTCCGAT GAGTTTGTTT 
CCTTCGTCAG TTTCCAAACT TCTGCAATGA GAAGCAATGG TGGATACAGG 
AAAGGGGTGA CCGAGGCCAA GATAAAGGTA GCCATCAATG GGTTCGGTAG 
GATTGGTAGG AACTTCTTGA GGTGTTGGCA TGGTCGTAAG GACTCTCCTC 
TTGATGTCGT TGTCATTAAC GACACTGGTG GTGTTAAACA AGCATCACAT 
CTCCTCAAAT ACGACTCAAC TCTTGGAATC TTTGACGCTG ATGTCAAACC 
TTCAGGAGAC TCAGCTCTCT CTGTTGATGG AAAGATCATC AAGATTGTAT 
CTGATCGTAA CCCATCTAAT CTCCCCTGGG GGGAACTAGG CATTGACTTA 
GTTATCGAAG GAACCGGAGT GTTTGTTGAC AGAGACGGTG CTGGGAAGCA 
CCTTCAGGCT GGAGCCAAGA AGGTTCTTAT CACTGCACCT GGAAAAGGTG 
ACATCCCAAC TTATGTCGTT GGTGTCAATG CTGAACTTTA CAGCCATGAA 
GATACGATCA TCAGCAATGC G

Gene models with high sequence identity

AT1G12900.1 [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
E-value: 0; Score: 100.00

3 prime EST [+] show sequence

AAGCAGAGGA TGTAATATGT TTGAATCAAG TTTATTACTA TAAATTATAG 
AGCACAAATA CATAATAAAC TCAGGAACTA CAATTATACA TTCCGAATCA 
TGTAACAGTA AAAAATAATG GAGCAGACAT CAAGAGGTTG TTGAGTCTTC 
ACTTCCAGTT ATTGGCAACA ATGTCAGCCA AATCAACGAC TCTCTGTGAG 
TAACCCCATT CATTGTCATA CCAAGCAATC ACTTTAACCA TATCATCTCC 
CATAACCATT GTGAGGGAAG AATCAATAGT GGAGGATACA TCAGAGCACC 
TGAAGTCAAC AGAGACAAGA GGCTCATCAC AGACGTCAAG GATACCTTTA 
AGCTCTTTCT CAGCTGCATC TCTGAAAGCA GCATTGACTT CTTCAGCAAA 
AGTTTTCTTG GAGACTTGCA CGACTAAGTC AACCACTGAA ACGTTTGGAG 
TTGGCACACG CAATGCAATT CCGTTAAGTT TTCCTTTGAG GTTAGGAAGC 
ACAAGAGCCA CAGCTTTGGC TGCTCCTGTA GATGTTGGAA CAATGTTCAA 
AGCTGCTGCT CTTGCTCTCC TTAGATCACG GTGGCTCGCA TCTAACAACC 
TTTGGTCACC AGTGTATGAG TGAGTAGTTG TCATTGTACC CTTTATGATC 
CCAAATTTCT GGTCAAGAAC CTTGACGAAT GGAGCGAGAC AG

Gene models with high sequence identity

AT1G12900.3 [+] show detail - glyceraldehyde 3-phosphate dehydrogenase A subunit 2
E-value: 0; Score: 100.00

AT1G12900.1

Model type: Protein coding
Short Description: glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Computational Description: glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47; Bacteria - 10700; Metazoa - 2230; Fungi - 2778; Plants - 3753; Viruses - 0; Other Eukaryotes - 5196 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12900.3

Model type: Protein coding
Short Description: glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Computational Description: glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL04-15-A14 introduced

F03640 - Specific phenotypes were NOT observed.
F03903 - Specific phenotypes were NOT observed.
F04008 - Specific phenotypes were NOT observed.
F04011 - Specific phenotypes were NOT observed.
F04034 - Specific phenotypes were NOT observed.
F05139 - Specific phenotypes were NOT observed.
F05704 - Specific phenotypes were NOT observed.
F06217 - rosette leaf::decreased size / whole plant::decreased height / stem::present in greater numbers in organism / fruit::abnormal / rosette leaf::decreased size / whole plant::decreased height / stem::present in fewer numbers in organism
F06250 - Specific phenotypes were NOT observed.
F06820 - Specific phenotypes were NOT observed.
F07238 - Specific phenotypes were NOT observed.
F07644 - Specific phenotypes were NOT observed.
F08731 - rosette leaf::abnormal / cauline leaf::decreased size
F13011 - Specific phenotypes were NOT observed.
F14031 - seed::increased size
F17144 - Specific phenotypes were NOT observed.
F19828 - Specific phenotypes were NOT observed.
F20432 - Specific phenotypes were NOT observed.
F22705 - Specific phenotypes were NOT observed.
F22948 - Specific phenotypes were NOT observed.
F26749 - seed::decreased size
F29444 - stem::abnormal / stem::abnormal / stem::abnormal
F30412 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

25 mutant lines found