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RAFL04-15-B17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00334)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-B17 - full reading 
ATCTAACTCT CTCTCTACTG CAATTTTTAG GGTTTTATCC TCCGAAAGTC 
TCAACCTTTT TCTTATCCTC AACAAGGAGA AATGGCGGCG ACTCAACTTA 
CAGCGTCACC AGTGACTATG TCAGCAAGGA GCTTAGCCTC GCTGGATGGT 
CTCAGAGCTT CGAGTGTCAA GTTTTCATCT TTGAAACCAG GGACCCTTAG 
ACAGAGCCAG TTCCGTCGTT TGGTTGTCAA AGCTGCTTCT GTTGTTGCCC 
CTAAGTATAC TTCAATTAAG CCATTGGGAG ATCGAGTTTT GGTGAAGATC 
AAGGAGGCAG AGGAGAAGAC TTTAGGTGGT ATCTTACTTC CATCCACTGC 
TCAATCAAAA CCTCAAGGAG GTGAAGTCGT TGCCGTGGGT GAAGGAAGAA 
CTATTGGGAA GAACAAAATT GATATCACTG TCCCTACTGG AGCACAAATT 
ATCTACTCCA AATACGCAGG AACTGAGGTG GAGTTCAATG ATGTGAAGCA 
TCTTATCCTC AAGGAAGATG ATATTGTTGG CATTCTTGAG ACAGAGGACA 
TCAAAGATCT CAAACCTTTG AATGACCGAG TCTTTATTAA GGTTGCTGAG 
GCGGAGGAGA AAACAGCTGG AGGGTTGTTG TTAACCGAGA CTACCAAAGA 
GAAGCCTTCT ATTGGCACGG TGATAGCAGT TGGACCGGGT TCCCTAGACG 
AGGAAGGTAA AATTACGCCT CTACCAGTAT CAACCGGAAG CACAGTACTT 
TACTCCAAGT ATGCTGGTAA CGACTTCAAG GGCAAAGATG GTTCCAACTA 
CATTGCCCTC AGAGCTTCAG ATGTGATGGC TATACTTTCT TAGTTATGTT 
ATATCTTTGT AATCTGCAAC TTGTATCCCA ATTGTGGAAA TTTTTTCCGT 
AAACGGCCTG AGCATAATCT GGAATAAAGA CTTGAGTTTG AAAATGTGAT 
TTTATTGAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT5G20720.1 [+] show detail - chaperonin 20
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Chaperonin Cpn10, subgroup 4.6e-25
FPrintScan Chaperonin Cpn10, subgroup 4.6e-25
FPrintScan Chaperonin Cpn10, subgroup 4.6e-25
FPrintScan Chaperonin Cpn10, subgroup 4.6e-25
HAMAP Chaperonin Cpn10, subgroup 22.586
HAMAP Chaperonin Cpn10, subgroup 21.083
HMMPanther Chaperonin Cpn10, subgroup 1.7e-41
Gene3D Chaperonin Cpn10 2.4e-26
Gene3D Chaperonin Cpn10 1.8e-23
HMMSmart Chaperonin Cpn10, subgroup 1.4e-40
HMMSmart Chaperonin Cpn10, subgroup 1.6e-40
superfamily GroES-like 2e-31
superfamily GroES-like 1.1e-29
PatternScan Chaperonin Cpn10, conserved site 0
PatternScan Chaperonin Cpn10, conserved site 0
HMMPIR Chaperonin 21, chloroplast 8.3e-169
HMMPfam Chaperonin Cpn10 1.9e-27
HMMPfam Chaperonin Cpn10 1.9e-26

See the detailed result >

AT5G20720.1

Model type
Protein coding
Short Description
chaperonin 20
Curator Summary
Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.
Computational Description
chaperonin 20 (CPN20); FUNCTIONS IN: calmodulin binding, copper ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin 21, chloroplast (InterPro:IPR017416), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chaperonin 10 (TAIR:AT1G14980.1); Has 18503 Blast hits to 9472 proteins in 2912 species: Archae - 42; Bacteria - 12669; Metazoa - 631; Fungi - 230; Plants - 426; Viruses - 4; Other Eukaryotes - 4501 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-B17 introduced

  • F12446 - Specific phenotypes were NOT observed.
  • F14020 - Specific phenotypes were NOT observed.
  • F15609 - Specific phenotypes were NOT observed.
  • F18525 - Specific phenotypes were NOT observed.
  • F19510 - rosette leaf::desaturated green / rosette leaf::abnormal / stem::desaturated green / cauline leaf::desaturated green / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::abnormal / stem::desaturated green / cauline leaf::desaturated green / whole plant::decreased height / fruit::abnormal
  • F26424 - seed::decreased width
  • F27441 - Specific phenotypes were NOT observed.
  • F30307 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found