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RAFL04-15-C24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87383)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL04-15-C24 - 5 prime EST 
GGTCTCTCTT CACTCGCCGG AGAGAGAGAA GAAGAAAAGA CGACGGAGAA 
ATGGCGGAGG AGCAGAAAAT GAAGCAGCTA AGCCGATTCT GGATTTGGGC 
TTTATCTTCC ATTGCTTTCC GATTGATCTT GATCTCCTTC CCGGGAAATC 
TCAATCTCTC TTCCCGTCCG GAGGTCTCTA CCCCTCTCAC CAGCATTCGC 
CGCCGTATCT CCTCTCTCTT TCTCACTCCC TCATTAGCTC TCTAAGATCT 
CGAATTCAGC TCACATTTCT TCGTTTTGTA TGAACATTTT CAGTTGCTGA 
AGGTTATTGG TTGAAGCAGG CATCGATGTC ACCATATGCA GGATCTATGT 
ATCATGGCTC ACCATTGCTG CTCTCGGTTC TTGGACCTCT CACAGTTCAA 
AGGATTAAAG GGCAACCAAG TCACCTCTTG TGCAGCTTGG TTTTTGTTAT 
TGCAGATATA TTAAGTGCAA TGCTTCTTCG AGCTATTGGT CAGAAACTCC 
AGATGGCTTA TGGACTGAAT GCGAGACTAC TTGGTTTTCT TAAGTCATCA 
AGGGATAAAG TGATCCTACC TTGTGGCGAT ATNGCTGCTC TTGTGTATNN 
GTGGAATCCT TTCACGATA

Gene models with high sequence identity

  1. AT1G63110.3 [+] show detail - GPI transamidase subunit PIG-U
    E-value: 0; Score: 99.35

3 prime EST [+] show sequence

Nucleotide sequence: RAFL04-15-C24 - 3 prime EST 
GCGGATCAAA ACAAGAACTT TAAAACCTCT CGGTAAAAAG TACAAATTAA 
TGGTTACTCT AAACGGAAAG GCACAGGAGA TTTGTTATTT ATATGATGTT 
CTCAAACAAA GAAAAGCTAC TCACACAAAT CACATGTTGC CAACTTTAAG 
CTAAAGACCC AACTCTTTTC TTTACGTGTA ACAGAAAAGT GGCGCAATGA 
CCTTCAATGG CTTAGCTCTT GACTTCTCGA TGGTTTGAGT TTGATCTCTT 
CAGCGCCCTG TCATGGTTTA GCATTGCGCT TACGCTCTCA ACCACGAAAA 
CGATCTGAAA GCACGCGTAG CCGATAGCGT TTCCAAAGTA GAAATTTGCA 
TTTCCGGTTC CCCGCCATAT CCAGAGATTG TGCATCACAG GGCTGAGGAG 
AGAGATCCCG AGATATCCAC AGAAGAGGAA GAACGAGAAC TTCATATCTA 
ATAACTCATT GACAAACAAT GCCCATAAGC TCAAGTATAA CGCCGAATCT 
CCGACTGAAG GATAAGATTT AAGAATCGAG GAGATCGCTA AGTATATGAA 
AGCCAGGAAA CATGGCCGAT GTTTCAACCT TATGGCTAAG GGCAGTAACA 
TGAACAGAAT ATTTACGTGT AAAACTATCA GAAAAAAGTT TCTGAAGAAG 
TCGAATACTT CTGCAAAGAA GTACCAAAA

Gene models with high sequence identity

  1. AT1G63110.3 [+] show detail - GPI transamidase subunit PIG-U
    E-value: 0; Score: 100.00

AT1G63110.3

Model type
Protein coding
Short Description
GPI transamidase subunit PIG-U
Computational Description
GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-C24 introduced

  • F08935 - rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / whole plant::increased height / stem::abnormal / stem internode::decreased length
  • F26333 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found