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RAFL04-15-D01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00502)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-D01 - full reading 
TGACGTCAAA CTCTCTCTAT ACACAGAGTT AAATTGAGTT TGTGTCTCGT 
AACTTATCCT GTGAGCGAAA ATGGTGAAAG CAACTAAGGC AGAGAAGAAG 
ATCGCCTACG ATACCAAGCT ATGTCAGCTT ATCGATGAGT ACACCCAGAT 
CTTGGTCGTT GCGGCCGATA ACGTCGGATC AACTCAGCTT CAGAACATCA 
GAAAGGGTCT TCGTGGAGAC TCCGTCGTGC TTATGGGGAA GAACACTATG 
ATGAAGCGTT CCGTTAGGAT TCACTCTGAG AACACCGGAA ACACTGCAAT 
CCTGAATCTG CTTCCTCTCC TTCAGGGAAA CGTTGGTTTG ATCTTTACCA 
AAGGTGACCT CAAGGAAGTG AGCGAGGAGG TTGCTAAGTA CAAGGTTGGT 
GCCCCTGCTC GTGTGGGTTT GGTGGCTCCA ATTGATGTGG TTGTCCAACC 
TGGCAACACT GGTCTCGACC CATCCCAAAC ATCTTTCTTC CAGGTGCTTA 
ACATCCCAAC CAAGATTAAC AAGGGTACCG TCGAAATCAT CACCCCAGTT 
GAGCTTATCA AGCAAGGTGA CAAGGTCGGG TCTTCTGAGG CTGCGCTTCT 
AGCCAAGCTT GGCATCAGGC CGTTCTCATA TGGTCTTGTT GTCCAGTCTG 
TCTATGACAA TGGCTCAGTC TTCAGCCCAG AGGTTCTTGA TCTTACTGAA 
GACCAACTTG TGGAGAAGTT TGCTTCTGGT ATCTCCATGG TCACTTCCTT 
GGCTCTTGCT GTGTCGTACC CTACCCTTGC TGCTGCACCG CATATGTTCA 
TCAATGCGTA CAAGAATGCC TTGGCTATTG CTGTTGCCAC TGAGTACACC 
TTCCCTCAAG CAGAGAAGGT CAAGGAATAC TTGAAGGATC CAAGCAAGTT 
TGCTGTTGCT TCAGTAGCTG CGGTGTCTGC TGATGCAGGT GGTGGTGCCC 
CAGCTGCTGC TAAGGTAGAG GAGAAGGAAG AGTCCGACGA AGAAGACTAT 
GGAGGTGATT TCGGTTTGTT CGATGAAGAG TAGATTTTGT CGGTTAAGAT 
CTTACCTTTT TGTCGTGGAT TATAAGTGTT GCTTTGTTTT TAGTATGTTG 
GACCTCAATT TTCTTGGTTT TAGCCAATCC AGTTTTATGT TACCAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G09200.1 [+] show detail - Ribosomal protein L10 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P0 3.5e-178
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 3.5e-178
HMMPfam Ribosomal protein L10 1.1e-21
HMMPfam Ribosomal protein 60S 1.5e-16

See the detailed result >

AT3G09200.1

Model type
Protein coding
Short Description
Ribosomal protein L10 family protein
Computational Description
Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1610 Blast hits to 1607 proteins in 477 species: Archae - 322; Bacteria - 1; Metazoa - 504; Fungi - 287; Plants - 176; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-D01 introduced

  • F09323 - Specific phenotypes were NOT observed.
  • F15049 - rosette leaf::dark green / stem::abnormal / whole plant::decreased height / stem::present in greater numbers in organism / stem::abnormal / stem internode::decreased length
  • F19105 - Specific phenotypes were NOT observed.
  • F22840 - Specific phenotypes were NOT observed.
  • F23602 - Specific phenotypes were NOT observed.
  • F26440 - seed::increased size / seed::increased length
  • F28423 - Specific phenotypes were NOT observed.
  • F29209 - seed::increased length

Mutant lines with disrupted or induced

8 mutant lines found