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  3. RAFL04-15-F19

RAFL04-15-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00433)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-F19 - full reading 
AACTTCTAGA AAAATCGCCA GAAGTGACGA AATTGAAAAT CTCAGATTTC 
TCTTAATCGG CGACGGAGTA ACGAAACAAG GAGAAGAAGA AGAAGAAGAA 
AATGACGACT CGAATCGCTC CTGGTGTTGG AGCTAATCTT CTCGGCCAAC 
ACTCCGCTGA GAGGAACCAA GACGCCACTG TTTACGTCGG TGGTCTCGAT 
GCTCAGCTTT CTGAAGAATT GCTTTGGGAA TTGTTCGTTC AAGCTGGACC 
TGTTGTTAAT GTCTATGTAC CGAAAGATAG AGTGACAAAT CTTCATCAGA 
ACTATGGATT CATTGAATAT CGTAGTGAGG AAGATGCTGA TTATGCGATT 
AAGGTTCTTA ACATGATTAA GCTCCACGGG AAGCCTATGC GTGTTAACAA 
GGCATCTCAA GATAAGAAGA GCCTGGATGT TGGTGCTAAC CTTTTCATTG 
GAAACCTTGA CCCTGATGTG GATGAGAAGC TCTTGTATGA TACTTTCAGT 
GCATTTGGTG TGATTGCTTC TAATCCTAAG ATAATGAGAG ATCCCGATAC 
TGGAAACTCA CGAGGTTTTG GTTTCATCAG CTATGACTCC TTTGAAGCAT 
CTGATGCTGC TATTGAGTCA ATGACTGGAC AATATCTCAG TAATCGTCAA 
ATCACAGTCT CTTACGCATA CAAGAAAGAC ACCAAAGGAG AGCGCCATGG 
TACTCCAGCA GAGAGGCTTT TGGCAGCCAC AAATCCAACT GCCCAGAAAA 
GCAGACCCCA TACGCTATTC GCAATGGGCC CTCCATCCAG TGCTCCTCAA 
GTTAATGGTC TACCACGTCC GTTTGCTAAC GGCAGCATGC AACCTGTCCC 
GATTCCCGCT CCCCGTCAAC CACCACCACC TCCTCCACAA GTATATCAAA 
CTCAGCCACC ATCCTGGCCA TCTCAGCCAC AACAACACAG CATGGTCCCA 
CCACCCATGC AATTCCGTCC ACCTCAGGGT ATGCCTCCGC CACCACCTCC 
TCAGTTTCTA AATCACCAAC AAGGTTTCGG TGGTCCGAGG CCGCCGCCAC 
CACCTCAAGC CATGGGAATG CACCAACATG GAGGATGGCC ACCGCAACAC 
ATGCAGCAGC AAGGTGGACC ACCACAACAA CAACAACCAC CATACCAACA 
CCATCACATG TCTATGCCTC CACCACCACC ACACCAAGGT TGATAATAAT 
CATCGCCTCA GTTTCGGACC AATTCAACTA TATGTAAACC CTTTCTTTAC 
TGGCAAGTAA TCCCGAGGAT TTTCCGTTTT AGATTCAATG AAACCTAATA 
GGGAGAGAGA GAAAGAGAAA GAGAGAGGGT GAGAGAGAGA TCACAATTAA 
TATTCTATAT TGTCTTGTCT GCAGAGAATC TCTTATCTTC GGTTTAGAGA 
GAGAGAGAGC GTAGAAATTA GTGCCAATGT GTGTCTGGTT TTTAGTGATG 
TTATTTCTTG TTTGTGTTGC AGAATCTCTG ATGCCGTGTG CTTTAATATT 
TACCAAAACT GTGCTGAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT2G18510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
HMMSmart RNA recognition motif, RNP-1 3.7e-23
HMMSmart RNA recognition motif, RNP-1 4.1e-23
Gene3D Nucleotide-binding, alpha-beta plait 1.2e-23
Gene3D Nucleotide-binding, alpha-beta plait 1.9e-23
HMMPfam RNA recognition motif, RNP-1 6.5e-17
HMMPfam RNA recognition motif, RNP-1 3.4e-19
superfamily RNA-binding domain, RBD 2.1e-23
superfamily RNA-binding domain, RBD 6.8e-23
HMMPanther SPLICEOSOME ASSOCIATED PROTEIN 8.5e-148
HMMPanther RNA-BINDING PROTEIN 8.5e-148
ProfileScan RNA recognition motif, RNP-1 17.421
ProfileScan RNA recognition motif, RNP-1 17.216

See the detailed result >

AT2G18510.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-F19 introduced

  • F02743 - Specific phenotypes were NOT observed.
  • F14036 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::abnormal / cauline leaf::dark green / stem::abnormal
  • F16631 - Specific phenotypes were NOT observed.
  • F22818 - Specific phenotypes were NOT observed.
  • F24549 - Specific phenotypes were NOT observed.
  • F24733 - Specific phenotypes were NOT observed.
  • F30446 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found