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  3. RAFL04-15-H06

RAFL04-15-H06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00503)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-H06 - full reading 
GTTTCATCTG TTGTTCCCTG TGACCATGGC TACTCCACTC TCAATCTCAT 
CAAATCCTCT CACCTCCCGC CATTGTTACC GTCTCCACTT ATCTTCTACT 
TCATTCAAGG GAAATGTAAG TGTTTTGGGG GCAAACCCAA GTCAGATTCT 
ATCTCTGAAA CTCAACCAAA CCCTTAAAAC GAGAAACCAA CAGCAATTTG 
CGAGACCCCT TGTTGTGGTT AGCCAAACGG CGGCTACGTC GTCGGCAGTT 
GTAGCTCCGG AGAGATTCCG TTTGGATAAT CTTGGACCAC AGCCAGGTTC 
GAGGAAGAAG CAGAAGAGAA AAGGTAGAGG TATCTCTGCA GGACAAGGAG 
CAAGTTGTGG TTTTGGTATG AGAGGTCAGA AATCAAGATC GGGTCCTGGG 
ATTATGAGAG GCTTTGAAGG TGGTCAAACT GCTCTTTATC GTCGTCTTCC 
CAAACTTAGA GGAATCGCTG GAGGTATGCG TTCAGGATTA CCTAAATACT 
TACCGGTTAA TATCAAAGAC ATAGAAACAG CTGGGTTTCA AGAGGGAGAT 
GAAGTGTCAT TGGAGACATT GAAGCAAAAG GGTTTGATTA ATCCTTCAGG 
GAGAGAAAGG AAACTCCCTC TTAAGATTCT GGGTACAGGA GAACTAAGCA 
TGAAGCTCAC CTTCAAAGCT CGTGCCTTCT CAACACAAGC AAAAGAGAAG 
CTTGAAGCTT CAGGTTGTAC ACTCACTGTG TTGCCGGGAA GAAAGAAATG 
GGTTAAGCCA TCTGTTGCAA AGAACCAAGC ACGAGCAGAT GAATACTTTG 
CCAAGAAGAG AGCTGCAGCA GCAGAAGCAG CAACTTCAGA GCCAGCAGCC 
TCTGCTTAAA TTACTTCAGT TTCAAGCTCT TTTTAGTGTT GTAAAGCTGC 
AGAGAAGATA ATTGTCTATG ACAAATGTTA ATTACAATTC CTTTGTCTTT 
TTGTATGGTG AAGAGATTTA CATTTTGTTG TTTGAAGAGT CATTATCAAA 
AAGATATTTA AACGGAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G25920.1 [+] show detail - ribosomal protein L15
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein L18e/L15 6.3e-23
superfamily Ribosomal protein L18e/L15 6.9e-27
HMMPanther 50S RIBOSOMAL PROTEIN L15 7.6e-212
HMMPanther Ribosomal protein L15, bacterial-type 7.6e-212
HMMTigr Ribosomal protein L15, bacterial-type 1.6e-44
PatternScan Ribosomal protein L15, conserved site 0
Gene3D no description 0.000037

See the detailed result >

AT3G25920.1

Model type
Protein coding
Short Description
ribosomal protein L15
Curator Summary
encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex
Computational Description
ribosomal protein L15 (RPL15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G64670.1); Has 7744 Blast hits to 7744 proteins in 2658 species: Archae - 15; Bacteria - 5386; Metazoa - 72; Fungi - 86; Plants - 90; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-H06 introduced

  • F01310 - Specific phenotypes were NOT observed.
  • F08844 - Specific phenotypes were NOT observed.
  • F21139 - rosette leaf::variegated / stem::desaturated green / cauline leaf::abnormal / fruit::abnormal
  • F25817 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found