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RAFL04-15-L21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00577)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-L21 - full reading 
GTGAATTCGC TCGGCGGCAT AAAAGAGAGT AAGAAGAGGA AGACGAGAGT 
TACAAGGATT GAAAATGAAG GGACGTCAAG GAGAGAGAGT TAGATTGTAT 
GTTCGTGGAA CAGTCCTCGG CTACAAGAGG TCCAAGTCGA ACCAATATCC 
CAACACTTCT CTCATCCAGA TTGAAGGTGT GAACACTCAA GAGGAGGTCA 
ATTGGTACAA GGGTAAGCGT TTGGCTTACA TCTACAAGGC AAAGACAAAG 
AAGAACGGTT CTCACTACCG TTGCATTTGG GGCAAAGTCA CTAGGCCTCA 
TGGTAACAGC GGTGTTGTCC GTTCTAAGTT CACTTCAAAC CTACCACCCA 
AGTCAATGGG AGCTAGAGTC AGAGTCTTCA TGTACCCTAG CAACATATGA 
GGAGGATAGA TTTCAAGAAG TATCGGAAGG AATCGCCATT ATCATTTCTC 
AGGAGCTGTA GTTTATCTAT TCACTTTTGT TCTAAACTCT CTGTTGGTTT 
TGATTTTATC TTTAGACGAA GTAAAACATT TTTCTTCTTG AGATAATATT 
AATGGAACTT

Gene models with high sequence identity

  1. AT1G41880.1 [+] show detail - Ribosomal protein L35Ae family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
BlastProDom Ribosomal protein L35Ae 3e-48
HMMPfam Ribosomal protein L35Ae 4.2e-43
PatternScan Ribosomal protein L35Ae, conserved site 0
HMMPanther Ribosomal protein L35Ae 5.5e-67

See the detailed result >

AT1G41880.1

Model type
Protein coding
Short Description
Ribosomal protein L35Ae family protein
Computational Description
Ribosomal protein L35Ae family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT3G55750.1); Has 766 Blast hits to 766 proteins in 257 species: Archae - 25; Bacteria - 0; Metazoa - 323; Fungi - 146; Plants - 149; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-L21 introduced

  • F18941 - rosette leaf::abnormal / stem::increased thickness / cauline leaf::abnormal / stem::abnormal / stem internode::decreased length / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found