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  3. RAFL04-15-N19

RAFL04-15-N19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12191)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-N19 - full reading 
ACATACACTC AAAATCTTAG CGGCATTTTT TCTAAAGGTT TCCCAAAGAA 
GGAGAGCTCA CTTTATCTTT CGTCTCTCTT CTTAGGTCTA GGGTTCTGGT 
GGAGAAGATT GTGGTTGTTT CTTAGGGTTT TCTGAGAGAA AGCATGTTGT 
TAACTACGGG AAGAAAGGAG AAACTCTCTG TTTCTAAAGG TTCTGAAATT 
GAAATCTCGT CTCAAGAGTA TGAGTATGGT AGTGGAAATG TCTGGTATTG 
TGTCATTCTC GAAGAAAATC TAGCTAAATC GAAGCGGAAG AAGCTCTCTG 
TCCGTCACTT GGATCCTCTG CTCAAGTATG ATTATTCTCC TCCGTTAATC 
AAAACCACCG TGCATCGTTT CATGCGTCCA GTTCCGCCGC CGGATCCATT 
TCCAGAGGTC GATTTTGAGG AAGGTGACGT GGTTGACGCT GCTTATAAAG 
GTGGTTGGTG TTCTGGCTCG GTGGTTAAAG TTTTGGGAAA TCGGCGTTTC 
TTAGTGTATC TTAGATTCCA ACCTGATGTC ATTGAGCTTC TACGAAAGGA 
TCTGCGTCCC CATTTCGTTT GGAAAGATGA AGAGTGGTTT CGATGCGAGA 
AACAACAATT GATTGAGTCA GATTTTAGTG CTGGAAAGTC TGTTGAAGTC 
AGAACCAAGG TAGACAAATT GGGCGATGTT TGGGCTCCGG CTATGGTCAT 
TAAGGAGGAT GAGGATGGGA CAATGTTGGT GAAGTTGAAG ACTTTGAAGG 
AGGAAGAGGT TAATTGCACA AAGATAAGCG TTTCTTATTC CGAAATCCGA 
CCTTCGCCAT TGCCTATTGG TTTAAGAGAT TACAAATTGA TGGAAAACGT 
GGATGCGCTA GTAGAGTCTG GTTGGTGTCC TGGTGTTGTT AGTAAAGTTC 
TTGCTGGGAA GAGATACGCA GTGGATTTGG GGCCAAACAG GGAGAGTAAG 
GAGTTTAGCC GCTTGCAGTT AAGACCTTCT ATAGAGTGGA AAGATGGAAT 
TTGGCATAGA AAAGAAAAGG TTTCAGGTAG CGAGGAAAGT TCGCATGCAG 
TTGAAGAAAC AGCTGCTTCA ACCCGCATAA GGATCACTGT TCGAACTGCC 
TTGAAAGAGA AAAAAGCTTT GGGTACTGGA ATCAATGTGA GGACGACACG 
CTCTTCTAGT GGAGCTATGC ATAACCCTCT TCCTGCCTCT TTCAATGGAG 
GAGATGTTGC AGAGGCTGGT AGAGTATCTG TCACTGTGAA TGAAACACCG 
CTCTTCGAAA CTGCAGCTTT ATCTGGAGAA CTAGGGAATA GTTTGGCTGA 
TGTTGTGATG AATGAGAGCG CTCCAGTCAC AAGCCAACCG GAGATAGCAG 
CACCAAAAGA GTTTCACCCA TCGGTAGTCC TGGGCGTAGC TGCAGCAGTC 
AAAACACAAG GAAAAACAAC TCCGAAGAAG AAACTTCAAG CGATGAAGAA 
TCAAAAGAGC TCTACAAATG ATTCTGTTGG AGAGAAGGTG AGTGTTAACA 
AGAGGAAAAG AGGACAGCCA CGCAAGTTCA TAGTCGCAGA GCCTAAGCAG 
AAGATTGGTG TGTCTGGTAA TAATTCAAAG GCTGCCACTA TTGAACATGC 
CGATATGACT GATGATGATA GGCCTCTCGC TTCATGGGTC CACACTGGAA 
ATTCATCATC GGGGCAATCT GTTTCTCGGA CTCCTGATAT AGGGCTTAAT 
ACAGTTGTGG AAAAGCATGT CGATATTGTG GAAACTCCCC CAGGGAGAGA 
GTCGACAATG GTTCTGCCAT TTGTAAAGAA GTCACAGCTT TGGAAAGTCC 
TTGAATCAAT GGAGGTCTTC AAAGTCGTGC CACAGAGTCC ACATTTCAGC 
CCTCTGCTAG AGAGCGAAGA AGAGTGCCGT GAAGGAGACG CCATTGGTAG 
AATGGTGATG TTTAGTTCGC TGTTAGAGAA AGTCAACAAT CTACAAGTCG 
ACGATCCAAT AAGCTCGATT AACAGGATCG ACGAGTGTTT CCTCAAGCTT 
GAGAAACACG GGTTCAATGT TACAACACCT CGATCTAGGA TAGCCAAGAT 
ACTGTCCATT AAAGAAAGGC AGACATGCGC ATTGGAGGAA TTAAAAGCTG 
TTGAGGAAAA GATCACAGAG AATGACAATA AAAGAAGGAA GTATGAAGAA 
GATATTGTTG AATTGCAGAG GCAAGAAGTG TTGATGAAGG AAGCAAAAGT 
CACACTAGAC AATGAGATAG CTCGGATGCA GTCTCAAGCA GCTGTTCTTG 
ACCAAGAGGT TCAGAATGTA GATCACGAAT TTCAGGCAAT TCTCGCTGCC 
CCATGGAAAT AAGCAAGTCG TTGATCAAAC CTTTGTGTTT AAGAATAATT 
GAGATCTCTG TACGTTGTTG GTAGAAAACA TAACTTTGAC TAATATATCA 
AGTAATGTCT CTGTTCGT

Gene models with high sequence identity

  1. AT3G62300.1 [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Tudor-like, plant 0.25
HMMSmart Tudor-like, plant 6.6e-14
HMMSmart Tudor-like, plant 1.2e-17
HMMSmart Tudor-like, plant 1.5e-16
Coil coiled-coil 0
HMMPfam Protein of unknown function DUF724 4.4e-75
HMMPfam Agenet 9.4e-17
HMMPfam Agenet 3.5e-12

See the detailed result >

AT3G62300.1

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 7
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-N19 introduced

  • F19546 - Specific phenotypes were NOT observed.
  • F23439 - Specific phenotypes were NOT observed.
  • F29727 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found