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RAFL04-15-O15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda16974)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-O15 - full reading 
CCCGGCCTCC TCCTTCACTC TTCATCTTCA AAGACTGCGC CTTTTAGCTC 
AGTGAAAAAG GTTCGAGCTT CGGAAACTAT GGCAGCATTC CCTAACCTTA 
ACTCTGATGC TGGATTGAAG AAGCTCGACG AGCATCTTCT CACTCGCAGT 
TACATTACTG GATACCAGGC TTCAAAGGAT GATATCACCG TCTTTGCAGC 
TCTTGCAAAG CCCCCAACTT CACAGTATGT GAACGCTTCT CGTTGGTACA 
ATCACATTGA TGCCCTCTTG AGGATCTCTG GTGTCTCTGC TGAAGGAAGC 
GGTGTCATTG TTGAGGGATC AGCTCCTATC ACTGAGGAGG CTGTTGCTAC 
TCCCCCTGCA GCTGATTCTA AGGATGCTGC GGCTGATGAA GAAGATGATG 
ATGATGTTGA CCTTTTCGGA GAGGAGACCG AAGAGGAAAA GAAAGCTGCT 
GAAGAGAGAG CAGCTTCTGT CAAGGCATCT ACAAAGAAGA AGGAATCTGG 
AAAGTCCTCA GTTTTGATTG ATATCAAACC GTGGGATGAT GAGACTGACA 
TGAAGAAGCT TGAGGAAGCT GTGAAGTCCA TTCAGATGGA AGGTTTGTTT 
TGGGGAGCAT CAAAGCTTGT CCCAGTTGGT TATGGTATCA AGAAGTTGCA 
GATTTTGTGC ACCATTGTTG ACGACCTTGT CTCTATTGAC ACCATGATCG 
AAGAGCAACT CACTGTTGAA CCGATCAATG AATATGTCCA GAGCTGTGAC 
ATTGTTGCCT TCAACAAGAT ATGAGGATGG AGAAAGCTTC AAGGAATGTC 
TGTGTTCATG TGGTCTGGTT CTTCTTCTTC TTCTATATTC AGTTTCCCAA 
GTTTTTGTAG ACTGTTGTTT TGACTCTGTT ATGGCCTGCC ATCTCTGATC 
CATTTTGATA TTTAATGAAA AGTGACAATT CAGTATTAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G30230.1 [+] show detail - Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 1.4e-32
PatternScan Translation elongation factor EF1B, beta/delta chains, conserved site 0
PatternScan Translation elongation factor EF1B, beta/delta chains, conserved site 0
Gene3D Translation elongation factor EF1B/ribosomal protein S6 3.5e-38
Coil coiled-coil 0
HMMPfam Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 5.8e-32
HMMSmart Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 2.2e-39
HMMPanther ELONGATION FACTOR 1-BETA 6.5e-148
HMMPanther ELONGATION FACTOR 1-BETA 6.5e-148

See the detailed result >

AT1G30230.1

Model type
Protein coding
Short Description
Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
Computational Description
Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B/ribosomal protein S6 family protein (TAIR:AT2G18110.1); Has 1011 Blast hits to 1009 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 524; Fungi - 164; Plants - 164; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-O15 introduced

  • F09728 - rosette leaf::decreased size / rosette leaf::increased width / sporophyte vegetative stage::decreased speed

Mutant lines with disrupted or induced

3 mutant lines found