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RAFL04-15-P04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07172)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-P04 - full reading 
GTAATTGAAC AAAAGAAAGA AAAACTGATA ATGAAGGGTC TTCATCTCCA 
CCTCGTCCTA GTCACCATGA CGATCGTTGC CTCCATCGCC GCCGCTGCAC 
CGGCTGCTCC CGGAGGAGCT CTGGCTGATG AATGCAACCA GGATTTTCAA 
AAGGTGACTT TGTGTTTGGA CTTTGCGACC GGGAAGGCAA CAATTCCGTC 
TAAGAAGTGT TGTGACGCTG TTGAAGATAT CAAAGAAAGA GATCCAAAGT 
GTTTGTGTTT CGTTATACAA CAAGCGAAGA CAGGAGGACA AGCCTTGAAG 
GATCTTGGTG TTCAAGAAGA CAAACTCATT CAACTCCCAA CTTCTTGTCA 
GCTCCACAAC GCTAGCATTA CCAACTGTCC AAAGCTTCTA GGGATTTCAC 
CTAGCTCGCC AGACGCAGCC GTGTTCACAA ACAATGCCAC AACAACACCG 
GTGGCACCAG CTGGAAAGTC TCCGGCAACT CCAGCTACGT CCACGGATAA 
GGGAGGATCA GCTTCAGCAA AGGATGGTCA CGCAGTCGTT GCTCTAGCCG 
TCGCTTTGAT GGCCGTCTCC TTTGTCTTGA CCTTGCCTAG ACATGTCACA 
TTAGGGATGT AATCTTTTCT TATGAAGTTG GTTGGTGCTT TTGTTTTTGT 
CCCTTTTGTT TCAAAACTTA TCTTTCAAGT GTGTTTCTTT GTTCGGACAT 
TTGTTGTAAT GAGTCAACTT CCCACTCAAA TCTGATATCT CTCCGCAAAT 
GAGTAAATTT ATGCT

Gene models with high sequence identity

  1. AT1G27950.1 [+] show detail - glycosylphosphatidylinositol-anchored lipid protein transfer 1
    E-value: 0; Score: 99.74

 

InterPro Scan Digest

Program Description E-value
Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 0.00068
HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.00028
HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.0000055
superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 1.7e-18

See the detailed result >

AT1G27950.1

Model type
Protein coding
Short Description
glycosylphosphatidylinositol-anchored lipid protein transfer 1
Curator Summary
Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.
Computational Description
glycosylphosphatidylinositol-anchored lipid protein transfer 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 597 Blast hits to 593 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-P04 introduced

  • F01511 - Specific phenotypes were NOT observed.
  • F12929 - rosette leaf::desaturated green / cauline leaf::decreased size / stem::decreased thickness / cauline leaf::present in greater numbers in organism / sporophyte vegetative stage::decreased speed / whole plant flowering stage::late / stem::present in greater numbers in organism / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / sporophyte vegetative stage::decreased speed
  • F18114 - Specific phenotypes were NOT observed.
  • F19935 - Specific phenotypes were NOT observed.
  • F25810 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found