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  3. RAFL04-15-P18

RAFL04-15-P18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00615)

full reading [+] show sequence

Nucleotide sequence: RAFL04-15-P18 - full reading 
ATCCTAAACA TTTTTTCTTG AATAAAATCA GAATTACAAA CAAAAATGGT 
TTTGCAAAAG CTTCCTCTCA TTGGGCTGCT TTTGCTCCTG ACCATCGTCG 
CCTCTCCAGC AAATGCAGAT GGACCTGTTT GCCCGCCGTC GAACAAACTA 
AGCCGGGCAA GTTTCCCTGA AGGTTTTTTA TTTGGCACGG CTACTGCGGC 
ATACCAGGTC GAAGGTGCGA TTAATGAAAC TTGTCGTGGA CCAGCCTTAT 
GGGACATCTA CTGTAGAAGA TATCCAGAGA GGTGCAATAA CGATAACGGC 
GATGTGGCCG TTGATTTCTT CCATCGTTAT AAGGAAGATA TCCAACTAAT 
GAAGAATCTA AACACAGACG CCTTTAGAAT GTCTATCGCA TGGCCAAGAA 
TATTTCCTCA TGGGAGAAAG GAGAAAGGAG TGAGTCAAGC TGGTGTGCAA 
TTCTACCACG ACCTCATCGA CGAGCTCATA AAAAATGGTA TAACTCCATT 
CGTTACTGTT TTTCACTGGG ACACTCCACA AGATTTAGAA GATGAATATG 
GCGGCTTTTT AAGCGAAAGG ATTGTGAAGG ATTTCCGAGA GTATGCAGAT 
TTTGTTTTCC AAGAATACGG TGGAAAAGTG AAACATTGGA TCACTTTCAA 
TGAGCCATGG GTTTTCTCGC ACGCTGGCTA TGACGTAGGC AAAAAGGCAC 
CTGGTCGTTG CTCTTCTTAC GTCAATGCTA AATGCCAAGA CGGACGATCA 
GGATACGAGG CTTACCTTGT CACTCACAAT CTCCTTATCT CTCACGCAGA 
AGCAGTTGAA GCTTACCGGA AATGCGAAAA GTGTAAAGGT GGGAAGATCG 
GAATTGCACA TAGTCCTGCT TGGTTCGAAG CACATGACCT TGCTGATTCA 
CAAGACGGTG CGTCCATCGA CCGTGCACTT GACTTTATTT TGGGATGGCA 
TCTAGACACA ACTACATTTG GAGATTATCC ACAGATCATG AAAGACATTG 
TTGGACATAG ATTGCCTAAA TTTACAACTG AGCAGAAAGC AAAACTGAAA 
GCTTCTACCG ATTTCGTTGG GCTCAACTAC TATACTTCAG TGTTTTCAAA 
CCATTTGGAG AAACCTGATC CTTCAAAACC AAGATGGATG CAAGATTCTC 
TTATTACATG GGAGTCTAAG AATGCGCAAA ATTACGCCAT TGGTAGCAAG 
CCTTTGACCG CTGCATTGAA CGTTTACTCG AGAGGTTTTA GAAGTCTGTT 
GAAGTACATT AAGGACAAAT ACGCAAATCC GGAAATTATG ATCATGGAAA 
ACGGATATGG AGAAGAACTA GGGGCCTCAG ATTCTGTTGC TGTTGGTACC 
GCTGATCATA ACAGGAAATA TTATCTTCAG AGGCATCTTT TGAGTATGCA 
AGAAGCTGTT TGCATCGACA AAGTGAATGT TACAGGATAC TTTGTATGGT 
CATTGTTGGA TAACTTCGAG TGGCAAGATG GTTACAAAAA CAGATTTGGA 
CTCTACTACG TTGATTTCAA AAATAACCTC ACACGTTACG AGAAAGAATC 
CGGCAAGTAT TACAAGGATT TCCTCAGTCA AGGTGTTCGT CCATCCGCGC 
TCAAGAAGGA TGAGCTTTAA GCTATTTCTG TTTCAATGTG TTTTTCCTAT 
GTTTTACTTT GTGAGTGACC AAGATTCATG AGGTCTTGGT TCTAATAAAA 
AGAGTTTATT TTTCTTCTCA TTTTTCATTG TCTACATGAT TTGCCAGATC 
TACAAGGCTC TGGTTATAAT AAAATGATCC TTTGTGCCT

Gene models with high sequence identity

  1. AT3G09260.1 [+] show detail - Glycosyl hydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Glycoside hydrolase, subgroup, catalytic core 9e-167
HMMPfam Glycoside hydrolase, family 1 1e-152
superfamily Glycoside hydrolase, catalytic core 4.7e-171
HMMPanther BETA-GLUCOSIDASE 0
HMMPanther Glycoside hydrolase, family 1 0
PatternScan Glycoside hydrolase, family 1, active site 0
FPrintScan Glycoside hydrolase, family 1 2.9e-22
FPrintScan Glycoside hydrolase, family 1 2.9e-22
FPrintScan Glycoside hydrolase, family 1 2.9e-22
FPrintScan Glycoside hydrolase, family 1 2.9e-22
FPrintScan Glycoside hydrolase, family 1 2.9e-22

See the detailed result >

AT3G09260.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Curator Summary
Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.
Computational Description
PYK10; FUNCTIONS IN: beta-glucosidase activity, copper ion binding, hydrolase activity, hydrolyzing O-glycosyl compounds, fucosidase activity; INVOLVED IN: ER body organization, response to salt stress, response to symbiotic fungus, cellular response to cold, response to osmotic stress; LOCATED IN: peroxisome, nucleus, vacuole, membrane, ER body; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G66280.1); Has 11331 Blast hits to 11008 proteins in 1473 species: Archae - 140; Bacteria - 7847; Metazoa - 701; Fungi - 200; Plants - 1444; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-15-P18 introduced

  • F08532 - Specific phenotypes were NOT observed.
  • F12814 - Specific phenotypes were NOT observed.
  • F18610 - Specific phenotypes were NOT observed.
  • F18802 - Specific phenotypes were NOT observed.
  • F21128 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found