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  3. RAFL04-16-A04

RAFL04-16-A04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00579)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-A04 - full reading 
ACGAACGCAT CTCATTGCTT CATCATTACC AAATCATCAA CTTAATCGTT 
TCTCTCAAAT TTAGGGTTTT CTCTTTTCTC GAAAGTCTTG CGGTTTTCTG 
AATCATCTCT ATCTGGTTTG AGGGTTTCGT TTGATATCTG GAGAAAGGGG 
TTTCTGGAAA CAAGGAGTTC ATAATTCGCG ATCTTGATCT ATCGATCTTC 
ATTTATATAT AAAAGCGTGA ATGAGATTAT GATGGAGTCG AAAGGTGGTA 
AAAAGAAGTC CAGCAGTAGT AGTTCCTTAT TTTACGAAGC TCCCCTCGGT 
TACAGCATTG AAGACGTTCG TCCAAACGGT GGAATCAAGA AATTCAAATC 
TTCTGTCTAC TCAAACTGCT CCAAGAGGCC ATCCTGAGTA CCAGCGTGCA 
CCGATCTTCA TAATATAGTT ATAGCTTTCT TTACTTTCCA GTTTATAATT 
TTCTTCTTTC AAAGCTCCTT TTCTGCTGGT TCCCGGATCC AATCGTTCTC 
TCCTCCTACT ACAAGTCCTG TCGCTCACAC AACAAGGCGA GATGGCCTTA 
TCTGCAATCG GTTTCGAAGG TTACGAGAAA CGGCTCGAGG TGACTTTCTT 
TGAGCCAAGC ATCTTTCAAG ACTCCAAGGG ACTGGGACTC CGTGCTCTGA 
CCAAGTCCCA GCTTGATGAA ATTCTTACAC CTGCTGCATG CACGATCGTT 
TCATCTCTCT CCAACGATCA ATTGGACTCT TACGTACTCT CTGAGTCCAG 
CTTCTTTGTC TACCCCTACA AAGTCATCAT CAAGACTTGC GGTACCACTA 
AGCTCCTCCT CTCTATCCCA CCACTTCTAA AGCTGGCTGG TGAGCTCTCT 
CTGAGTGTCA AGTCTGTGAA GTACACTCGC GGCTCCTTCC TCTGCCCCGG 
AGGCCAGCCT TTTCCTCACC GCAGCTTCTC TGAAGAAGTC TCTGTTCTTG 
ATGGGCACTT TACTCAGCTG GGCTTGAACA GCGTAGCCTA CTTGATGGGC 
AATGATGATG AGACTAAGAA ATGGCATGTC TATGCTGCCT CTGCCCAGGA 
CTCCAGCAAC TGCAACAACA ATGTCTACAC TCTCGAGATG TGCATGACTG 
GTCTGGACAG AGAGAAAGCT GCTGTCTTCT ACAAGGATGA AGCTGACAAG 
ACTGGGTCAA TGACTGATAA CTCTGGAATC AGAAAGATCC TTCCCAAGTC 
TGAGATCTGC GACTTTGAAT TCGAGCCCTG CGGCTACTCT ATGAACTCAA 
TTGAAGGGGA TGCAATCTCC ACGATCCATG TGACCCCTGA AGATGGGTTT 
AGCTACGCTA GCTTCGAAGC TGTGGGTTAC GACTTCAACA CCCTTGACCT 
TAGCCAGCTG GTGACAAGGG TTCTCTCTTG CTTCGAGCCC AAGCAATTCT 
CTGTAGCTGT GCACTCGAGC GTTGGAGCGA ACTCATACAA GCCAGAGATT 
ACTGTAGACT TGGAAGACTA TGGGTGCAGA GAGAGGACAT TTGAGTCTCT 
AGGAGAAGAG AGTGGAACAG TGATGTATCA GACGTTTGAG AAGCTTGGTA 
AGTACTGTGG ATCGCCTAGA TCTACCTTGA AGTGTGAATG GAGCAGCAAC 
AATAGCTGCA GCAGCGAGGA CGAGAAGGAC GAGGGAATCT AGCAGAATTT 
TTCTTCCTAA TAACTATTTT CGAGCTTTCT GTTTTTGTTC TTTCTTTTTA 
AAAAACTTAT TAAGTTCTTA TGAATAATGA CTTGTGAAGT TTGAGTTCGT 
CTCCTTCACA AGCAAGTTGT ATTGGTGTTT TCTACTTTAT GAATATGGGT 
TTTATATACC TAAAGACTTG TTATGTTATT ATTCTTAAAT GTTGCTGCTA 
TGATGATTAC TATTATCGAT TTTTAC

Gene models with high sequence identity

  1. AT3G02468.1 [+] show detail - conserved peptide upstream open reading frame 9
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr S-adenosylmethionine decarboxylase subgroup 8.5e-135
HMMPfam S-adenosyl-l-methionine decarboxylase leader peptide 3.1e-33
HMMPfam S-adenosylmethionine decarboxylase 1.1e-138
superfamily S-adenosylmethionine decarboxylase, core 3.7e-128
HMMPIR S-adenosylmethionine decarboxylase subgroup 3.5e-124
PatternScan S-adenosylmethionine decarboxylase, conserved site 0
Gene3D S-adenosylmethionine decarboxylase, core 7.1e-118
HMMPanther S-adenosylmethionine decarboxylase 1e-147

See the detailed result >

AT3G02468.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 9
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF9 represents a conserved upstream opening reading frame relative to major ORF AT3G02470.1
Computational Description
conserved peptide upstream open reading frame 9 (CPuORF9); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 10 (TAIR:AT5G15948.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-A04 introduced

  • F00621 - Specific phenotypes were NOT observed.
  • F01325 - Specific phenotypes were NOT observed.
  • F02402 - Specific phenotypes were NOT observed.
  • F02836 - Specific phenotypes were NOT observed.
  • F03422 - Specific phenotypes were NOT observed.
  • F03612 - Specific phenotypes were NOT observed.
  • F18510 - Specific phenotypes were NOT observed.
  • F25806 - rosette leaf::epinastic / stem::abnormal / whole plant::decreased height / stem::abnormal
  • F26138 - Specific phenotypes were NOT observed.
  • F26328 - seed::increased size

Mutant lines with disrupted or induced

12 mutant lines found