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RAFL04-16-A18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07173)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-A18 - full reading 
ATTTCGCGAA CTTTCTCCTT AGAATCGGAA CGGACGAAGA AGGAAGACAA 
GGAAGAAGAT CGGAGATGGC ATCGAATGCG GCGGTTCCGT TCTGGAGAGC 
GGCGGGGATG ACATATATAT CGTATTCAAA CATCTGTGCG AATATCGTGA 
GGAACTGTCT CAAGGAGCCA CACAAAGCTG AAGCTCTTAC TCGCGAGAAG 
GTTCACTTCT CTCTCTCCAA ATGGGCTGAT GGAAAGCCCC AGAAACCTGT 
TTTGCGGTCA GACACACCTG AAGTTTGAAG TCAACTTTGA GCTTATGTTC 
TTAAGGGATT CAAAAGTAAC TGAGTTACCA AGATTTGTTT TCTTTTTATT 
GTCAACAATG GAGCTTGAGT GAAAAACTCA TTTCCGATCA TAATAATGAC 
ACACTGAGTC TTGTGTATCT CTTTTCTTCT TTTGCTATTC TGTTTCACTT 
TTTGTATGCG AACAATGAAA AAAAGCCTTT AAAGACTCTT CTGGCTAAAG 
ACAAGTTCTT TTGATTGT

Gene models with high sequence identity

  1. AT1G51650.1 [+] show detail - ATP synthase epsilon chain, mitochondrial
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D ATPase, F1 complex, epsilon subunit, mitochondrial 4.8e-18
HMMPanther ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL 2.1e-26
HMMPfam ATPase, F1 complex, epsilon subunit, mitochondrial 6.3e-22
superfamily ATPase, F1 complex, epsilon subunit, mitochondrial 1.6e-16

See the detailed result >

AT1G51650.1

Model type
Protein coding
Short Description
ATP synthase epsilon chain, mitochondrial
Computational Description
ATP synthase epsilon chain, mitochondrial; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP biosynthetic process, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, epsilon subunit, mitochondrial (InterPro:IPR006721); Has 247 Blast hits to 247 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 12; Plants - 69; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-A18 introduced

  • F18839 - seed::increased size / seed::increased length
  • F19716 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found