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RAFL04-16-C20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00586)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-C20 - full reading 
ATGTATTCTT CTCCTTGTCC TTCCTTACTC TCTATATTTT TCTCAATTCT 
CCGATTTGAT CCAACGATTT CACAGATCTC TGATCTAAAT GGCATCCAAC 
GGTGATAAAG GACTGATCGT TAGCTTCGGC GAGATGCTAA TCGATTTCGT 
CCCTACCGAA TCAGGCGTCT CTCTCGCCGA AGCTCCTGGA TTCCTCAAAG 
CTCCAGGCGG TGCTCCCGCT AACGTCGCAA TCGCTGTTTC TCGTCTCGGT 
GGACGATCTG CTTTCGTCGG AAAACTTGGA GACGACGAGT TCGGTCATAT 
GTTGGCTGGG ATTTTGAGGA AGAACGGTGT TGATGATCAG GGGATTAACT 
TCGATACTGG AGCTAGAACT GCTTTAGCTT TCGTTACGTT ACGTGCTGAT 
GGAGATCGTG AGTTTATGTT TTACCACAAT CCTAGCGCCG ATATGCTTCT 
TCGTCCTGAT GAACTCAATC TCGACCTCAT CAGATCCGCG AAAGTGTTTC 
ACTATGGATC AATAAGTTTG ATAGTGGAGC CGTGTAGGTC AGCTCATTTG 
AAGGCCATGG AAGTGGCGAA AGAAGCAGGA GCTCTTCTTT CCTATGACCC 
AAACCTCAGG GAGCCTCTGT GGCCATCAAA AGAAGAAGCC AAAACACAGA 
TCATGAGCAT TTGGGACAAA GCTGAGATCA TCAAGGTGAG CGATGTTGAG 
CTTGAGTTTC TAACTGGAAG CAACAAGATT GATGATGAGA CCGCGTTGAC 
CTTGTGGCAT CCCAACTTGA AGCTGTTGTT AGTCACTCTT GGTGAAAAGG 
GCTGTCGGTA TTACACCAAG ACTTTCAAAG GAGCCGTTGA CCCTTTCCAT 
GTGAACGCTG TGGACACAAC CGGAGCTGGA GATTCCTTTG TCGGTGCTCT 
TCTAAACCAG ATTGTCGATG ATCGATCCGT TCTCGAGGAC GAAGAGAGAT 
TGAGGAAAGT GCTGAGATTC GCAAATGCTT GTGGAGCAAT CACAACGACC 
AAAAAAGGAG CCATTCCAGC TCTTCCCTCA GATGCTGAAG TTCGGAGCTT 
TCTCGAAAAG AAATAGAAAC AAAACAAACT CAAGCTTCTA TTACGTAATC 
TGTTTCCGCG ATTATCTTCT CTTTTTGTAT TCTTGTTTTC GGATGGTTGA 
ATCGAGAAGA GAAACAAATT CGGCATTCCG CTCTGTTTTT GTTTCTCTTC 
TTCAAATGTA ATGATTTAGA AAAGACGTAT GTTGCAATTT AAGGCTTCAC 
TTGCTAATAA AATGATAAGG TTTTTC

Gene models with high sequence identity

  1. AT2G31390.1 [+] show detail - pfkB-like carbohydrate kinase family protein
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 9.2e-91
FPrintScan Ribokinase 2.6e-06
FPrintScan Ribokinase 2.6e-06
PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
HMMPanther FRUCTOKINASE 2.6e-145
HMMPanther SUGAR KINASE RELATED 2.6e-145
superfamily Ribokinase-like 5.7e-86
HMMPfam Carbohydrate/purine kinase 2.5e-86

See the detailed result >

AT2G31390.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Computational Description
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 18509 Blast hits to 18503 proteins in 2397 species: Archae - 386; Bacteria - 14053; Metazoa - 143; Fungi - 116; Plants - 466; Viruses - 0; Other Eukaryotes - 3345 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-C20 introduced

  • F01747 - Specific phenotypes were NOT observed.
  • F02625 - Specific phenotypes were NOT observed.
  • F05709 - seed::increased size
  • F07707 - Specific phenotypes were NOT observed.
  • F08843 - stem::abnormal / stem internode::decreased length
  • F12036 - rosette leaf::decreased size / rosette leaf::increased width / stem::abnormal / whole plant::decreased height
  • F12303 - Specific phenotypes were NOT observed.
  • F19145 - rosette leaf::present in greater numbers in organism / cauline leaf::increased size / stem::dark green / fruit::increased length / stem::abnormal / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::dark green / stem::abnormal / cauline leaf::dark green / whole plant::decreased height
  • F21535 - Specific phenotypes were NOT observed.
  • F23139 - Specific phenotypes were NOT observed.
  • F27745 - seed::increased size
  • F28434 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found