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RAFL04-16-C20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00586)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-C20 - full reading
ATGTATTCTT CTCCTTGTCC TTCCTTACTC TCTATATTTT TCTCAATTCT 
CCGATTTGAT CCAACGATTT CACAGATCTC TGATCTAAAT GGCATCCAAC
GGTGATAAAG GACTGATCGT TAGCTTCGGC GAGATGCTAA TCGATTTCGT
CCCTACCGAA TCAGGCGTCT CTCTCGCCGA AGCTCCTGGA TTCCTCAAAG
CTCCAGGCGG TGCTCCCGCT AACGTCGCAA TCGCTGTTTC TCGTCTCGGT
GGACGATCTG CTTTCGTCGG AAAACTTGGA GACGACGAGT TCGGTCATAT
GTTGGCTGGG ATTTTGAGGA AGAACGGTGT TGATGATCAG GGGATTAACT
TCGATACTGG AGCTAGAACT GCTTTAGCTT TCGTTACGTT ACGTGCTGAT
GGAGATCGTG AGTTTATGTT TTACCACAAT CCTAGCGCCG ATATGCTTCT
TCGTCCTGAT GAACTCAATC TCGACCTCAT CAGATCCGCG AAAGTGTTTC
ACTATGGATC AATAAGTTTG ATAGTGGAGC CGTGTAGGTC AGCTCATTTG
AAGGCCATGG AAGTGGCGAA AGAAGCAGGA GCTCTTCTTT CCTATGACCC
AAACCTCAGG GAGCCTCTGT GGCCATCAAA AGAAGAAGCC AAAACACAGA
TCATGAGCAT TTGGGACAAA GCTGAGATCA TCAAGGTGAG CGATGTTGAG
CTTGAGTTTC TAACTGGAAG CAACAAGATT GATGATGAGA CCGCGTTGAC
CTTGTGGCAT CCCAACTTGA AGCTGTTGTT AGTCACTCTT GGTGAAAAGG
GCTGTCGGTA TTACACCAAG ACTTTCAAAG GAGCCGTTGA CCCTTTCCAT
GTGAACGCTG TGGACACAAC CGGAGCTGGA GATTCCTTTG TCGGTGCTCT
TCTAAACCAG ATTGTCGATG ATCGATCCGT TCTCGAGGAC GAAGAGAGAT
TGAGGAAAGT GCTGAGATTC GCAAATGCTT GTGGAGCAAT CACAACGACC
AAAAAAGGAG CCATTCCAGC TCTTCCCTCA GATGCTGAAG TTCGGAGCTT
TCTCGAAAAG AAATAGAAAC AAAACAAACT CAAGCTTCTA TTACGTAATC
TGTTTCCGCG ATTATCTTCT CTTTTTGTAT TCTTGTTTTC GGATGGTTGA
ATCGAGAAGA GAAACAAATT CGGCATTCCG CTCTGTTTTT GTTTCTCTTC
TTCAAATGTA ATGATTTAGA AAAGACGTAT GTTGCAATTT AAGGCTTCAC
TTGCTAATAA AATGATAAGG TTTTTC

Gene models with high sequence identity

  1. AT2G31390.1 [+] show detail - pfkB-like carbohydrate kinase family protein
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 9.2e-91
FPrintScan Ribokinase 2.6e-06
FPrintScan Ribokinase 2.6e-06
PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
HMMPanther FRUCTOKINASE 2.6e-145
HMMPanther SUGAR KINASE RELATED 2.6e-145
superfamily Ribokinase-like 5.7e-86
HMMPfam Carbohydrate/purine kinase 2.5e-86

See the detailed result >

AT2G31390.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Computational Description
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 18509 Blast hits to 18503 proteins in 2397 species: Archae - 386; Bacteria - 14053; Metazoa - 143; Fungi - 116; Plants - 466; Viruses - 0; Other Eukaryotes - 3345 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-C20 introduced

  • F01747 - Specific phenotypes were NOT observed.
  • F02625 - Specific phenotypes were NOT observed.
  • F05709 - seed::increased size
  • F07707 - Specific phenotypes were NOT observed.
  • F08843 - stem::abnormal / stem internode::decreased length
  • F12036 - rosette leaf::decreased size / rosette leaf::increased width / stem::abnormal / whole plant::decreased height
  • F12303 - Specific phenotypes were NOT observed.
  • F19145 - rosette leaf::present in greater numbers in organism / cauline leaf::increased size / stem::dark green / fruit::increased length / stem::abnormal / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::dark green / stem::abnormal / cauline leaf::dark green / whole plant::decreased height
  • F21535 - Specific phenotypes were NOT observed.
  • F23139 - Specific phenotypes were NOT observed.
  • F27745 - seed::increased size
  • F28434 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found