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  3. RAFL04-16-E03

RAFL04-16-E03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87394)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL04-16-E03 - 5 prime EST 
TTTCCTGTCT ACCCAAAAAC AAACCCTAGT GTCCGAATTC TCGACAAAAT 
TCATCGGCTC CAAATTCCAT TCGTGCTTTT TGAATTCGCG TTCTTCTGAT 
TCAAGATGTT TCTTTCACCT GGTCATTCTC CTCGTCAGAT TTCTTCTCCA 
TCGCCGTCTT CTTATTCCGA TGATACCCTC CGATCAACGC CTCGCAGTTC 
TTCCTCGGAG ATCATTCCTC GAAACCCTAG AAAACGGATG AGAGTTCTCG 
ATGAGGACGC TTATGTTGAA GCAATCGAGA AGATCATCGA GCGTGATTAC 
TTTCCAGATA TAACTAAGCT TAGGGATCGG CTCGATTGGA TCCAAGCGGT 
GAAAACCCGT GACCCGATTC AAATCCGAGA TGCCCAGTTG AAGATTATCG 
AGAGGCGTGG AAAGAAGGCG AATCATCATG TTGGAGATAC CGAGGGTAAA 
ACTCAAACTC CTGGATCTAC TTTTCTGAGA AATTTCACTC CTTTAGATGA 
ATTTGATGGT AAAACCCCTA GAACTCCTGG AGTATCTGGT AGAGAATTTC 
ATGGTGTTGA AGTAGATGCT GGTGATGGNG ATGAAGATAT AGATCTTAAT 
TTGTCCCTAG ATGANTCCTT TANGAGA

Gene models with high sequence identity

  1. AT3G07790.1 [+] show detail - DGCR14-related
    E-value: 0; Score: 99.36

3 prime EST [+] show sequence

Nucleotide sequence: RAFL04-16-E03 - 3 prime EST 
AAATGCGAAG ATAGATAGCA TTCCATTTAA AATCTGTCAT ATCAGTAATT 
GGTACAAGAA GAAGTAACTT TGTTGCCTAT GTGAGCACCA AAGCATTCAA 
CAACAGATAA CCATAACATT GGCACCATCA AGGCGACCTT GTCTCTGAGC 
TGGTCCCATC TTTGCCAAAT CTTGAAATAC TTCTCACACT CTTAGGAGTC 
ACAGCACCAG GACTTGCTCC ACGAGGACTT GCTCCACGAT AACTTGCACG 
AAGGCTCTCA TCAACAGTAG AAGATGATTT AGCCTATTGC CTTTCTGAAA 
AACTTCTGAG CAGCGGGTGA AAGAGTCCTA ACATTCGGAC TTGCACTTCC 
ACTTCGATGA GGAGATGGCA ACGGAGGTTT CTTAAACATA CTATTCGATC 
TCTCTCTAAG TTTTCGCGAT GCATCCCTTG ATAATGAATG TGCCCTTACA 
TCTCTAGGAG GTGCAGATGG AATGTTATAG TGCGGTCCAT CAGCACTACC 
ACCAATATCA ATAGGTGTAT CCTCAAGATC TAATCGCATT GGTGTCCCAT 
CAATCTCACC CCCATGTTAT AAAGGGTGAT TCATCAAGAC CTGGAGCAGG 
AGAAGGCGTT CTAACAAAAA CTAT

Gene models with high sequence identity

  1. AT3G07790.1 [+] show detail - DGCR14-related
    E-value: 0; Score: 99.68

AT3G07790.1

Model type
Protein coding
Short Description
DGCR14-related
Computational Description
DGCR14-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear protein DGCR14 (InterPro:IPR019148); Has 334 Blast hits to 326 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 84; Plants - 40; Viruses - 21; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-E03 introduced

  • F05546 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / fruit::decreased length / fruit::decreased thickness

Mutant lines with disrupted or induced

1 mutant line founds