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RAFL04-16-F14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00652)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-F14 - full reading 
CCGAAACTCG TCTGAGAGAG GCTCTGAGAT TCGATGTCGT TCGAGGAAGA 
AGAAGAGGAG GAAACATTCG AGCATACACT TCTCGTGGTG CGTGAGGTCT 
CCGTTTACAA GATCCCGCCG CGAACCACAT CCGGCGGATA CAAGTGCGGC 
GAATGGCTTC AATCCGATAA GATCTGGTCT GGTAGACTCC GCGTCGTATC 
GTGCAAGGAT CGATGCGAGA TCCGCCTCGA GGATTCGAAT TCCGGTGATC 
TTTTCGCAGC TTGTTTTGTG GATCCTGGAC GTAGAGAGAA CTCTGTAGAG 
CCGTCTCTCG ATTCGTCTAG GTATTTCGTT CTCAGGATCG ATGACGGGAG 
AGGGAAGTAT GCGTTTATCG GGCTAGGATT CGCTGAGAGG AACGAAGCGT 
TTGATTTCAA TGTTGCGTTA TCGGATCATG AAAAGTACGT TAGGAGGGAG 
AAAGAGAAGG AGACAGGGGA AACGAGTGAG AGCGATAATC ATATTGATAT 
CCATCCTGCC GTTAATCACA GATTGAAGGA AGGTGAAACC ATAAGAATCA 
ACGTGAAGCC GAAACCAACA ACAAATGGCA CTGGGATGCT CTCAGCTGCT 
CTTTCAGGAA CGGGGAAGCC AAAACCTCTA GCACTTGCCC CACCCCCCAA 
AGCTGCCGGA GTAACCAGGT CTCCTTTACC TCCTCCTCCA AACGATCCCG 
TCGCTTCAAG GATTGCATCT GATGGCTGCA AGGAATCACG CAGGAACGAG 
CCTCTATCTG ATCTATCTCA GCTCAAAAAA TCTTCCTTCA ACGGCGGGAT 
CAGGATCGAG CAAGTCAACA GGAGCTGCAT CAGGTTGGGC AGCTTTCTGA 
TGAATGGAGT GTAAAATTTA AGTTATTGGA CAAGTCCGGC TTCATCTTCT 
TGTGACTTGA GAGCACGAGA CAATAGACAA CAATGGTGGT CAGCCAACAG 
TCTTTTTGAT GTATGTTAAT GGTAAGTTGA TGTGTGTTTC TTTGTAATCC 
TCCCACACTC CCTGTTTTAA TTATTTTTCT TCCTTATAAT CATCGTTGTT 
ACATTATCGA TTATCATTTG TATCACTGAG ATATTAATAT ATACAAAAAG 
GCTTTTT

Gene models with high sequence identity

  1. AT1G03900.1 [+] show detail - non-intrinsic ABC protein 4
    E-value: 0; Score: 99.82

 

InterPro Scan Digest

Program Description E-value
HMMPanther ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATE 1.5e-91
HMMPfam Adaptin ear-binding coat-associated protein 1 NECAP-1 2.5e-55

See the detailed result >

AT1G03900.1

Model type
Protein coding
Short Description
non-intrinsic ABC protein 4
Curator Summary
member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.
Computational Description
non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-F14 introduced

  • F12112 - Specific phenotypes were NOT observed.
  • F13921 - Specific phenotypes were NOT observed.
  • F16627 - rosette leaf::abnormal / stem::present in fewer numbers in organism
  • F16640 - Specific phenotypes were NOT observed.
  • F23927 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found