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RAFL04-16-G07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00640)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-G07 - full reading 
ATCCACTATC AAATGAAAGT CTGAAGACAA ATTCTTCCAT TAGAAGAAGA 
AGATGGCTCT TCTCTGCTTC AATTCTCTCC CTTCTCTCTC TTCTCTTTCT 
TCTTCTTCTT CCTCGCGCCT TCTTCAATCT CCGTCTTTCG CTTCTCCAGT 
TTTGAGCCTT AAACCCAACG CTGTCGAGTC CAAGAACAGA GTCTCTCTCA 
GTGCTTACAG CTTGAACTCT AGCCATGGAA GAATTGTGGT GAAGGCGGCT 
GCTTCTGGCG TGGACGGGGC TGAGCCTGAG AGCAAGGAGG AACCAAAGAC 
TGTTGTTGCT GCTGTTCAAG TGGATAAACT ACCGTTGGAA TCGAAAGAAG 
CTAAAGAGAA ACTGCTCTTG GAATTGAGGC TGAAGATGAA GCTGGCCAAA 
AAGATTAGGC TACGCAGGAA ACGTCTGGTT CGTAAGCGTA AGATGAGGAA 
GAAGGGTCGA TGGCCACCTT CCAAGATGAA GAAAAACAAG AATGTCTAAG 
TGACTCAACT GTTTGCTGCT TTTCGTATTC GTTTTTTGTA ATGTTCTTTT 
TGGTGTTCAA AGACCATTAA TGTACTTCAA ATGCAACCAT TGTTTTTGGA 
TTTAACTTCA AAGCTGAGTT CTTTAAAGAA ACCATTTGT

Gene models with high sequence identity

  1. AT3G56910.1 [+] show detail - plastid-specific 50S ribosomal protein 5
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

See the detailed result >

AT3G56910.1

Model type
Protein coding
Short Description
plastid-specific 50S ribosomal protein 5
Computational Description
plastid-specific 50S ribosomal protein 5 (PSRP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-G07 introduced

  • F01519 - Specific phenotypes were NOT observed.
  • F03734 - seed::decreased length
  • F03816 - Specific phenotypes were NOT observed.
  • F29449 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found