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RAFL04-16-G19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02323)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-G19 - full reading 
AAAAACTTTC AGTCAAATCT TGAGAACAGA AAGAAAGTCC ACGCGAGGAC 
ATAAGCGCGT GTGATTTAAA ATCGTCGTCG TCGTCTTCCA CACCGACTTT 
AATCTGATTC TTAGAATCGC CGTTTGGTTT TTAACCAGAG AGATTATCTA 
CCAAGGAACG ATGATTATTG AAAGAGCTCG AGTTCCGTTG AGCCGATGGC 
AACAAGCGGC CGTGGCGATG GGATCTGCTC TCGGTGCGTT GGTTGATCCT 
CGTAGAGCGG ATCTAATCGC TGCTCTCGGC GAAACTACCG GTAAACCAGC 
TTTTGAAATG GTTCTTGAGA GAATGAAGAA GAGCGAAGAA GGAAGAGCTA 
TATTATTGGA GCGTCCTCGA GTTGTGTCAG AGCAAGTAGG TCATGCTTGG 
GATCTACCAG AAAACACATT TGGAGCTGCA TATGCTAAAT TCATGGGATC 
TAGAAACTTC TCTCCCGATG ATCGTCCGCC CGTAAGATTC ATGGAGACGG 
ATGAATTGGC TTACGTAGCG ACACGGGCAC GCGAAGTTCA CGACTTATGG 
CACACTCTGT TTGGCCTTCC TACGAATCTT ATCGGCGAGT CGTCTTTGAA 
AGTTATCGAG TTTGAGCAAA TGTATCTTCC GATGTGTATG CTCTCTGTGA 
TTGGAGGTAC TGTGAGGTTC AACGAGAAGC AAAGATCAAT GTTCTTGAAG 
CATTACCTTC CTTGGGCTGT TCGTGCTGGA AGACAATGCA CTGACCTCAT 
GTGTGTGTAC TATGAGCGTC ACTTTAGTGA AGACTTGGAG CAAGTTCGTA 
GAAAATGGGG AATCATCCCT GCTCCTCAAC ATCCTAAATG ACGGTTCTAG 
TTTAATCTGT TTTCGAATCA CTTAGTTATG CCAAATCTCT TATAAATGTG 
TAGTGGATTG GATTAAAAGT TGTACTCGCA TTTGATGGTT AATAAGAGAC 
AAGTTGG

Gene models with high sequence identity

  1. AT2G03690.1 [+] show detail - coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Coenzyme Q biosynthesis Coq4 1.7e-89
HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN 7.7e-59

See the detailed result >

AT2G03690.1

Model type
Protein coding
Short Description
coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein
Curator Summary
Ubiquinone biosynthesis protein COQ4 homolog.
Computational Description
coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715); Has 675 Blast hits to 675 proteins in 251 species: Archae - 0; Bacteria - 141; Metazoa - 162; Fungi - 176; Plants - 60; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-G19 introduced

  • F16114 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / cauline leaf::increased width / whole plant::decreased height
  • F28736 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found