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  3. RAFL04-16-I05

RAFL04-16-I05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00639)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-I05 - full reading 
CTGATCAGAT GTGCCAGCTA TACAAAAGTC TCTCACGTCT CTCCCAGAAA 
ACTCTTATTT TATCGCCGAG AAAGTGACGG AAAACGAAAT CCAAACGGGA 
TAATAAACCT AAAACCTAAA TTAGTGATTT AGCTACGACT CCTAAAGATT 
CAAATTTGGG TTACATCGGA CGAATCATGA CTCTGCTTCC GATTTCAATC 
TTCTTCTTCT TTTTATTTTG CATTCCTTCG CCATTAATCG CCGCCGCTAA 
CGATGACGAT ATACCGACGG CGTACACTCT CCTCCAAAGC TACAACTTTC 
CCGTCGGGAT TCTTCCTAAA GGAGTGGTGT CATATGATTT AGATAAATCT 
ACTGGTCAAT TCCACGCGTA TTTCAACAAA TCGTGCAGTT TCGCTCTTCA 
AGGCTCTTAC CAATTGGATT ACAAATCGAC AATCTCTGGA TACATATCGG 
AGAACAAGAT CACGAAGCTT ACCGGCGTGA AGGTGAAAGT TCTCTTCTTG 
TGGCTCAACA TCGTTGAGGT TATTAGGAAC GGAGACGAAC TCGAGTTCTC 
CGTTGGGATC ACATCGGCGA ACTTCGAGAT CGATGAGTTT TACGAGTCGC 
CACAGTGTGG TTGCGGATTT GATTGCAAAA CGAAGACGAA GACTTTGGGA 
AGAAACCCTT TTGTTTCTTC GGTTTAAAGG TTAAGACTTC TTATTGCAGA 
ATCTGAACTC TTTGGATGAT TTATGTTCTT TCTCCAATCA TTTAATTTTT 
CAATCAATGC TTTGTTTGTA TCTCTTCTTA GGATCGAACC GATAAGTTGT 
ATTTATGAAC CGATCAGGAA TAAAACAGTG GTGGAAAAAG TTAATTCTTA 
TGTCTAAGGA GAAGATTGGC ATGAATTTGA GTTTCGTATT GGCTGATCAA 
TGGTTTGTGT GTTGCATTCG ACGAATGCTT ATGAATGTCT GTATGAAACG 
TTAGATCTTT TGTC

Gene models with high sequence identity

  1. AT1G02816.1 [+] show detail - Protein of unknown function, DUF538
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Protein of unknown function DUF538 5.6e-32
HMMPfam Protein of unknown function DUF538 4.4e-40

See the detailed result >

AT1G02816.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-I05 introduced

  • F26301 - Specific phenotypes were NOT observed.
  • F29319 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found