1. Home
  2. Full-length cDNAs
  3. RAFL04-16-L01

RAFL04-16-L01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87399)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL04-16-L01 - 5 prime EST 
ATGTCTCTTG CATCCCAAAT ACAAGTCGTC TCGTTCAAGC ACATATGAGA 
AGAATGGAAA AGCNTGCCGC AATTCATTAC NGGCACTGGA GCAATTGCTG 
GTTTTTTTAG TAATGATGCT GTCACAGTTG GCGATTTAGT TGTCAAGGAT 
CAGGAGTTTA TCGAGGCAAC CAAGGAGCCT GGTATAACAT TTGTTGTAGC 
TAAATTTGAT GGTATCCTTG GTCTTGGATT CCAAGAGATC TCTGTTGGAA 
AAGCTGCTCC TGTTTGGTAC AACATGCTCA AGCAAGGCCT TATCAAGGAG 
CCGGTTTTTT CATTTTGGCT TAACCGTAAT GCAGATGAAG AAGAAGGTGG 
TGAACTTGTA TTTGGAGGTG TTGATCCAAA TCATTTCAAG GGCAAACATA 
CATATGTTCC TGTGACACAA AAGGGCTACT GGCAGTTTGA CATGGGTGAT 
GTTCTTATTG GCGGTGCACC CACTGGGTTC TGTGAAAGTG GCTGTTCTGC 
GATAGCAGAT TCTGGTACAT CTTTGCTTGC CGGTCCAACG ACTATNATCA 
CCATGATAAA CCATGCTATT GGAGCAGCTG GAGTTGTTAG CCAGCAGTGC 
AAGACTGTTG TGGATCAATA CGGGCAGACC ATTTTTGGAT TTACTTTTGT 
CTGAG

Gene models with high sequence identity

  1. AT1G11910.1 [+] show detail - aspartic proteinase A1
    E-value: 0; Score: 99.39

3 prime EST [+] show sequence

Nucleotide sequence: RAFL04-16-L01 - 3 prime EST 
GGAGATAAAG CGAGCTTGAC CATTTTCAAA TTTTTTATGC TACACCGTTT 
TTACCGAACC ATTTGATACA ACTTACTAAG CATAAACAAA AGAGGCAGGC 
TTTATTAAAG TTTTCAGTTT TTTCACCATC GAACTTACTT AGAAGGTATT 
TACAAAGCCA ATGCCTTCAA AACTACAAAG GCCTTTTTTC GTTAGGAAAC 
AACTTAAAAG GAACTGCGCC ACCATTTCTA CTACGACTCA AAGTCCTCAA 
CTCCAGAAAA CATACAAACA ACACTTGAGA CGCAGATTGT TCATACTAAA 
ACCATACGCG ACACCAACCC GATCGTGTTT AGGCTGCCTC TGCAAACCCG 
ACCTGTTCGT TACCAAAGTC AAATACGGTG TGGTATTTGC CCATGAACAC 
ATCTCCCAAG ATCCAGAGAG GTCCACGAGG TGGAGCAACG TCAAGAGCAA 
TAAAACCACT GATGCACTGT GCCACAGGTC CCTCACCAAC TTTCAGAACA 
TACTCTTCTG GAGCAAGATC AAATACTTTG CCTCCAATGG TAAGTGAAAC 
AGTGGGCATT GTTGACAGTT GTGCACAGTC AACTGCAGAC TCTCCCATTG 
GGCTGGGGAG GCGTTCACAT AGCTCGTTGA CGTAGTTCAA TATGCGCTCT 
TGAGTCATGT TTTGCCTCAA CTGGCTCTGG ATCCACACAA CAGCCATCTC

Gene models with high sequence identity

  1. AT1G11910.1 [+] show detail - aspartic proteinase A1
    E-value: 0; Score: 100.00

AT1G11910.1

Model type
Protein coding
Short Description
aspartic proteinase A1
Curator Summary
Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
Computational Description
aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-L01 introduced

  • F03450 - Specific phenotypes were NOT observed.
  • F06813 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

23 mutant lines found