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RAFL04-16-M03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07183)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-M03 - full reading 
GGGATCCAAT AGAGAAAACC ATTACACGAG AAAGGAAAAA AATGGTGAAT 
CCTTCTTCAC CTGGAATTGC CATACTCGGA GCTGGGATCT TCGTCAAAAC 
TCAATACATT CCGAGATTAG CTGAGATCTC CGATCTCGTC GACCTGAAAG 
CGATTTGGAG CCGTACTGAG GAATCTGCAA AAGGAGCTGT GGAGATAGCA 
AGAAAGCATT TTCCTGAAGT GAAGTGCAAA TGGGGAGATG AGGGTCTCAA 
TGAGATCATT CAAGACAGTT CAATAGTTGG TGTTGCTGTA GTTGTAGCTG 
CAGAAACCAT GGTTGAATTG TCACTGAAGA TGCTCAAGGC AGGAAAGCAC 
GTCCTTCAAG AGAAGCCAGC TGCTGCTTCA ATCAGTGAGA TAGAAACTGC 
AATGTCAAGC TATAGAAATA TTTCTGCTGA TTCCCCATGC CGTCCAATTT 
GGGCTGTGGC TGAAAATTAT CGTTTTGAGC CAGCTTTTGT TGAGTTGAAG 
AAACTGATAG CAGAAATTGG AGATATGATG AACGTCCAGC TTATTATTGA 
GGGATCAATG AACAGTTCTA ATCCTTATTT CTCAAGCTCC TGGAGGCGAA 
ATTTGAGTGG TGGTTTCATC TTGGATATGG GTGTACATTA CATTGCAGGA 
TTAAGAATGC TTGTTGGATG TGAGGTAACA TCAGTCTCAG CCACCACTAC 
CCATGTGGAT AAGACTTTAC CTGGACCAGA CAATATAACA TCAAACTTTC 
AGCTCGAGAA CGGATGCTCT GGGGTTTTTG TTATGGTTGT GTCTTCAAGG 
TCTCCAAAGA TACTATGGAG AATCGTAGGA CTAAAGGGCA CTGTTCAACT 
AGAGCGTGGA GTGGAAGGTG GCCGACATGG TTACATGGCC ACGATTTACG 
GGGAAGGAGG GACATCAAGG ACCATCTTTT ACCCATTCAG CGGAGTGACT 
GAAGAGTTAA AAGCGTTCTT CAATGATATT TCAGAAACTT CAAAGGAGCA 
AGAGCCTCGT CTATCATATG TGGAAGGTGC TCGTGACGTT GCAGTTCTTG 
AAGCAATGCT CGAGTCTGGT GCGAAAAATG GAGCCGTAGT CCCTGTCAAC 
AAATTCTAGC TTTGAACCTT TATTAAGTAC GATTAGACTC CAACATACCG 
CTAAAGCTTT TGCTGGAATA AAAATTGTTA CCGTTCAACA TGATAATACA 
AACTCTATAA TATTTCTTTT GTAAC

Gene models with high sequence identity

  1. AT3G20790.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 1.6e-11
Gene3D no description 4.5e-16
HMMPfam Oxidoreductase, N-terminal 6.9e-12
HMMPfam Oxidoreductase, C-terminal 1e-05
HMMPanther OXIDOREDUCTASES 1.4e-32
superfamily NAD(P)-binding domain 2.8e-23
superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 1.2e-06

See the detailed result >

AT3G20790.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); Has 7400 Blast hits to 7400 proteins in 1508 species: Archae - 172; Bacteria - 5330; Metazoa - 189; Fungi - 322; Plants - 48; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-M03 introduced

  • F29618 - rosette leaf::dark green / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / fruit::decreased length / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found