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RAFL04-16-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02336)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-O12 - full reading
AAGAGTGGTG TAGTGAGAGA AGAAAGATAG AGAAAAAAAA TGGGAGGCAA 
AGGTGTGATG ATGGTGGCGA TACTTTGCCT TTGGGCACTC TCTGCAACAT
CTGAAGCAGT AACAGAGGCT GAGCCAGGTT TGATGATGAA CTTCTACAAG
GACACGTGTC CTCAGGCCGA AGACATCGTC CGTGAACAAG TCAAACTCCT
CTACAAACGC CACAAGAACA CCGCTTTCTC TTGGCTCCGT AACATCTTCC
ATGACTGCGC CGTTGAGTCA TGTGATGCGT CGCTTTTGCT GGATTCGACA
AGAAGAGAGC TAGGAGAGAA AGAACACGAC AGGAGCTTCG GACTTAGAAA
CTTTAGGTAC ATCGAGGAGA TCAAGGAAGC TCTCGAGAGG GAGTGTCCTG
GTGTTGTCTC ATGTTCTGAC ATTCTCGTCT TGTCCGCAAG AGAAGGCATC
GAAGCAGTAG GAGGACCTTA TATTCCTTTG AAGACAGGAA GGAGAGATGG
ACTTAAAAGC AGGACGGATA TGCTCGAGTC ATATCTTCCC GACCACAACG
AGAGTATCTC CGTCGTTCTT GAAAAGTTCA AATCCATCGG TATCGACACT
CCCGGCCTCG TCGCCCTCCT AGGGTCACAC AGCGTGGGAA GAACTCACTG
TGTCAAGCTG GTCCATCGTT TGTACCCTGA GGTGGACCCG TCCTTAAACC
CGGACCACGT CCCTCACATG CTACACAAGT GTCCTGACTC GATCCCTGAC
CCAAAGGCGG TCCAGTACGT GCGTAACGAC CGTGGCACCC CCATGGTGCT
AGACAACAAT TACTACCGTA ACATCCTAGA CAACAAGGGT TTGCTCCTTG
TGGACCATCA GCTCGCACAC GACAAACGAA CCAGACCAAT CGTTAAGAAG
ATGGCTAAGG ACCAGGCCTA CTTCTTCAAG GAGTTCACTA GGGCAATCCA
GATCTTATCC GAGAACAACC CCTTGACTGG CTCTAAGGGT GAGATCAGGA
AGCAATGTAA TCTCGCAAAC AAGAACCATT GAAGTTGGAA AAAGTGAGAA
AGACAGGGGC TCTGGTGTGT TGAGTTCTCT GCTTGGTACG AACCAAGATG
AATAAAAAAA TCTTTTAAGT TAAATCAAAG AAAGGGTGAT GATGAATACA
TCATGGTAGT GACCACCTCC TTCTTTTGTG TGTTCAGCCT TAATGCTTTA
ATTATGATGT TAGTGGCTTT GAGTTATTTA ATCTAAATGT TGGCTCTTCG
TT

Gene models with high sequence identity

  1. AT4G21960.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 2.7e-47
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
HMMPfam Haem peroxidase, plant/fungal/bacterial 4.8e-60
superfamily Haem peroxidase 2.7e-89
ProfileScan Haem peroxidase, plant/fungal/bacterial 66.939

See the detailed result >

AT4G21960.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes AT4g21960 (AT4g21960/T8O5_170).
Computational Description
PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-O12 introduced

  • F01439 - Specific phenotypes were NOT observed.
  • F03521 - Specific phenotypes were NOT observed.
  • F04124 - Specific phenotypes were NOT observed.
  • F04834 - Specific phenotypes were NOT observed.
  • F05613 - Specific phenotypes were NOT observed.
  • F07719 - Specific phenotypes were NOT observed.
  • F10739 - Specific phenotypes were NOT observed.
  • F11048 - Specific phenotypes were NOT observed.
  • F11724 - Specific phenotypes were NOT observed.
  • F13203 - Specific phenotypes were NOT observed.
  • F14148 - seed::increased size / seed::increased length
  • F19109 - Specific phenotypes were NOT observed.
  • F20818 - Specific phenotypes were NOT observed.
  • F22635 - seed::increased size
  • F25333 - seed::decreased size / seed::decreased length / seed::increased width
  • F25338 - Specific phenotypes were NOT observed.
  • F28730 - Specific phenotypes were NOT observed.
  • F28849 - Specific phenotypes were NOT observed.
  • F29227 - Specific phenotypes were NOT observed.
  • F29403 - Specific phenotypes were NOT observed.
  • F29609 - Specific phenotypes were NOT observed.
  • F30127 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

26 mutant lines found