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RAFL04-16-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02336)

full reading [+] show sequence

Nucleotide sequence: RAFL04-16-O12 - full reading 
AAGAGTGGTG TAGTGAGAGA AGAAAGATAG AGAAAAAAAA TGGGAGGCAA 
AGGTGTGATG ATGGTGGCGA TACTTTGCCT TTGGGCACTC TCTGCAACAT 
CTGAAGCAGT AACAGAGGCT GAGCCAGGTT TGATGATGAA CTTCTACAAG 
GACACGTGTC CTCAGGCCGA AGACATCGTC CGTGAACAAG TCAAACTCCT 
CTACAAACGC CACAAGAACA CCGCTTTCTC TTGGCTCCGT AACATCTTCC 
ATGACTGCGC CGTTGAGTCA TGTGATGCGT CGCTTTTGCT GGATTCGACA 
AGAAGAGAGC TAGGAGAGAA AGAACACGAC AGGAGCTTCG GACTTAGAAA 
CTTTAGGTAC ATCGAGGAGA TCAAGGAAGC TCTCGAGAGG GAGTGTCCTG 
GTGTTGTCTC ATGTTCTGAC ATTCTCGTCT TGTCCGCAAG AGAAGGCATC 
GAAGCAGTAG GAGGACCTTA TATTCCTTTG AAGACAGGAA GGAGAGATGG 
ACTTAAAAGC AGGACGGATA TGCTCGAGTC ATATCTTCCC GACCACAACG 
AGAGTATCTC CGTCGTTCTT GAAAAGTTCA AATCCATCGG TATCGACACT 
CCCGGCCTCG TCGCCCTCCT AGGGTCACAC AGCGTGGGAA GAACTCACTG 
TGTCAAGCTG GTCCATCGTT TGTACCCTGA GGTGGACCCG TCCTTAAACC 
CGGACCACGT CCCTCACATG CTACACAAGT GTCCTGACTC GATCCCTGAC 
CCAAAGGCGG TCCAGTACGT GCGTAACGAC CGTGGCACCC CCATGGTGCT 
AGACAACAAT TACTACCGTA ACATCCTAGA CAACAAGGGT TTGCTCCTTG 
TGGACCATCA GCTCGCACAC GACAAACGAA CCAGACCAAT CGTTAAGAAG 
ATGGCTAAGG ACCAGGCCTA CTTCTTCAAG GAGTTCACTA GGGCAATCCA 
GATCTTATCC GAGAACAACC CCTTGACTGG CTCTAAGGGT GAGATCAGGA 
AGCAATGTAA TCTCGCAAAC AAGAACCATT GAAGTTGGAA AAAGTGAGAA 
AGACAGGGGC TCTGGTGTGT TGAGTTCTCT GCTTGGTACG AACCAAGATG 
AATAAAAAAA TCTTTTAAGT TAAATCAAAG AAAGGGTGAT GATGAATACA 
TCATGGTAGT GACCACCTCC TTCTTTTGTG TGTTCAGCCT TAATGCTTTA 
ATTATGATGT TAGTGGCTTT GAGTTATTTA ATCTAAATGT TGGCTCTTCG 
TT

Gene models with high sequence identity

  1. AT4G21960.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 2.7e-47
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Plant peroxidase 2.4e-34
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
HMMPfam Haem peroxidase, plant/fungal/bacterial 4.8e-60
superfamily Haem peroxidase 2.7e-89
ProfileScan Haem peroxidase, plant/fungal/bacterial 66.939

See the detailed result >

AT4G21960.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes AT4g21960 (AT4g21960/T8O5_170).
Computational Description
PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-16-O12 introduced

  • F01439 - Specific phenotypes were NOT observed.
  • F03521 - Specific phenotypes were NOT observed.
  • F04124 - Specific phenotypes were NOT observed.
  • F04834 - Specific phenotypes were NOT observed.
  • F05613 - Specific phenotypes were NOT observed.
  • F07719 - Specific phenotypes were NOT observed.
  • F10739 - Specific phenotypes were NOT observed.
  • F11048 - Specific phenotypes were NOT observed.
  • F11724 - Specific phenotypes were NOT observed.
  • F13203 - Specific phenotypes were NOT observed.
  • F14148 - seed::increased size / seed::increased length
  • F19109 - Specific phenotypes were NOT observed.
  • F20818 - Specific phenotypes were NOT observed.
  • F22635 - seed::increased size
  • F25333 - seed::decreased size / seed::decreased length / seed::increased width
  • F25338 - Specific phenotypes were NOT observed.
  • F28730 - Specific phenotypes were NOT observed.
  • F28849 - Specific phenotypes were NOT observed.
  • F29227 - Specific phenotypes were NOT observed.
  • F29403 - Specific phenotypes were NOT observed.
  • F29609 - Specific phenotypes were NOT observed.
  • F30127 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

26 mutant lines found