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RAFL04-17-B14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00637)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-B14 - full reading 
ACGACCACAG CCTTTAGCTT ATTTGTGTGG CGAAGAGAAG AGATAACATT 
CCTAAGCAAA TCTCTTCTCT CTCCCATTCG TCTCCAAAGA GATTACAGTT 
TTGAGCATTT CTCATCTCTC GAAGCTCTTC TCTGTGTGTG TGGCGATGGC 
TGCTAATTCG ATAATGGCTT CCTCCAAACC CCTAATCTCC CTGTCATCCA 
ACCAACAACC AAACCGAGTC CAAATTCCCA AATTCGCCAA ACTTCCCCAA 
ATTCCCAAAT CCCTCACTTC CTCCACCGAT CTCCGTAGCA AAGCACTATC 
ACTCTCCTCC GCCACCGCCA AATCCTTAGC TTTAATCGCC GCTTTCGCTC 
CTCCGTCGAT GGCGGAGGCG ATGGAGAAAG CACAGCTCTT CGATTTCAAT 
CTCACGCTTC CGATCATCGT TGTTGAGTTT CTCTTCTTGA TGTTCGCTCT 
CGACAAGGTC TATTACTCTC AGCTTGGTAA CTTCATGGAT CAAAGAGACG 
CTTCCATCAA AGAGAAGCTC GCGAGTGTTA AGGACACTTC GACTGAAGTA 
AAGGAGCTCG ATGAGCAAGC CGCCGCCGTG ATGAGAGCAG CTAGGGCTGA 
GATCGCCGCC GCGCTTAACA AGATGAAGAA GGAGACTCAG GTTGAAGTCG 
AGGAGAAGCT AGCGGAGGGA AGGAAGAAGG TGGAGGAAGA GCTAAAAGAA 
GCTTTGGCGA GCTTGGAGAG TCAGAAAGAA GAAACCATTA AAGCTTTGGA 
TTCTCAGATT GCTGCTCTTA GTGAAGACAT TGTCAAGAAG GTTCTTCCTT 
CTTAAATTAT ATTTTTGTTA ACTGTGTAAT TCTCTGTCTC TCTATCTCAA 
AACTTATTTA CAAGAAATTA CTGTAAATCT CTTCTTCTTC TTCTTCTCTG 
TTTCTTGGAT TGTTCGTCGT TCAAAGAAGA ACAATTTTTA TTTTGTAAGT 
TTATAAATAA TTAGCTCTCT TCTGT

Gene models with high sequence identity

  1. AT4G32260.1 [+] show detail - ATPase, F0 complex, subunit B/B', bacterial/chloroplast
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam ATPase, F0 complex, subunit B/B', bacterial/chloroplast 9.6e-30
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT4G32260.1

Model type
Protein coding
Short Description
ATPase, F0 complex, subunit B/B', bacterial/chloroplast
Computational Description
ATPase, F0 complex, subunit B/B', bacterial/chloroplast; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit B/B', bacterial/chloroplast (InterPro:IPR002146); Has 2587 Blast hits to 2581 proteins in 935 species: Archae - 6; Bacteria - 1820; Metazoa - 10; Fungi - 8; Plants - 73; Viruses - 1; Other Eukaryotes - 669 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-B14 introduced

  • F06920 - Specific phenotypes were NOT observed.
  • F24225 - Specific phenotypes were NOT observed.
  • F27145 - seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found