1. Home
  2. Full-length cDNAs
  3. RAFL04-17-B18

RAFL04-17-B18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda16982)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-B18 - full reading 
CCGATCACCT ACAAAGCAGA GAGAGAGAGA GAGAGAGATA AATGTCCAAG 
CAAAGGTTCA TATAATTTTA TGTTATTAAA TTTGCTTTTT TTTTTGTTAA 
AGTGTTACAT ACATCGATCG ACTTGTTAGT TCAAAGAATC AGTTTAACTC 
CACTGAGCCA TCATGGGTCG ATCTCAAGAA CAGGGACAGG GACAGGGTCC 
GGTTCACAGC ATTCGGCTAT CTACCGTAGG TGCGACCCGG CCGACAGAGA 
CGGGTACGAC CCACGAACCA ACCGGTTTAG ACCTAGCCAT GAAGCTCCAC 
TACCTCAAGG CGGCATACAT TTACTCAGCC GAGACAGCAC GTGACTTAAC 
CGTGAGACAC CTGAAGGAGG CCATGTTCAT GTTGTTCGAC CAGATCGCTT 
GGACCACAGG CAGGTTCTCA AGGAGAGACT CGGGCCGTCC GTACATCAAG 
TGCAACGACT GCGGCACACG TTTCGTGGAA GGTCAATGCA ATCTCACTGT 
GGAGGAGTGG CTCAGTAAAC CGGACCGGTC AGTTGATGAG TTTCTGGTTT 
ATCATCATCC TATTGGACCG GAATTGACGT TCTCTCCTTT GATCTACGTT 
CAGATGACCC GGTTTAAATG CGGAGGATTA GGGTTGGGCC TAAGCTGGGC 
CAATATAATA GGAGACGCAT TCTCTCTGTT CTATGCCTTC AACTTATGGG 
CTAAGGCCAT TACCGGAGAA AAGATTTATG CCCCAACAAC ACCCTCTATA 
GGAGAGAGAA GGTTCCAAAG CCCAAACCCG ACGGTTAAAG ATCCGGTTTC 
AATTAAACGG GTCGAACCCG TTGGAGATCT CTGGGTCACT CCAAACGACA 
AGAAATTGGC GAATTACTGT TTCAATCTCT CAGTCGCCGA TCAGATATCA 
CCACATTTTC CGGCGAAGGG AGATGACTCG ATTCCGGTGT TCGAGATTCT 
CGCCGGAATC ATATGGAAAT GCATAGCTAA AGTTAGGGTA GAGCCAAAGC 
CTGTAACGGT TACGATCATT AAAAAAGATC CGAACGATCT GAAACTTAAT 
GCGATTCGAA ACAGTCAGGT GATCAGCTCA GTGAGCGTGG ATTTTCCGGT 
GGCGGAAGCG ACGGTGGAGG AATTAGTGAA AGCTATGGGG GAAGCGAAGG 
ATGAGAGATG TGGAATTGAG GAGATCGGAG AGAGTTGCGA TGGGAATTTG 
GATTTTGTTG TTTATGGAGC GAAATTGACG TTTCTGGATC TGACTGGTGA 
GGATTTGTAT GAGGCGAAAG TGATGGGGAA GTCGCCGGAG TCGGTTTATT 
GTAATGTGGA GGGGATAGGG GAGGAGGGAT TGGTGGTTGT TTACGCGGCG 
GCGAAATCGG AGGAGAGGGT TGTGACGGTT ACGTTGCCGG AGGAAGAGAT 
GGAGAGGGTA AAATTGGAAT TTAAGAAGTT TGGTTTGATC GCGCCATGAG 
AAATCAAACG GCAAATAATA AGTGTAAACG TGAAGTGATG AAGTGTTATG 
TTATCGTTTT AAAACAAGTA AAGTTTCACA AAAAAAA

Gene models with high sequence identity

  1. AT4G13840.1 [+] show detail - HXXXD-type acyl-transferase family protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
HMMPfam Transferase 7.4e-26
Gene3D no description 1.7e-33

See the detailed result >

AT4G13840.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G23840.1); Has 1220 Blast hits to 1220 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-B18 introduced

  • F02513 - Specific phenotypes were NOT observed.
  • F10142 - Specific phenotypes were NOT observed.
  • F13612 - seed::increased size
  • F14541 - Specific phenotypes were NOT observed.
  • F26842 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / stem::increased thickness / whole plant::decreased height / fruit::decreased length / stem::abnormal / stem::abnormal
  • F30143 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found