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  3. RAFL04-17-C12

RAFL04-17-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07186)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-C12 - full reading 
GTCTCAAACC GTTCCTTCTC TTTTAACACT TGTTCTTTTA AGGCAAAAAG 
GCTCGAGCCA CAGAGATCTG AGTTTCTCTT CTTCGAGATC TGATCGCCGA 
ATCTCATAAT CTCCCATCGA AGCAGAATGG AGACTTTTCT ATTCACATCT 
GAGTCTGTAA ACGAGGGACA CCCAGACAAG CTCTGTGACC AGATCTCTGA 
TGCAGTCCTC GATGCCTGCC TTGAACAAGA CCCTGACAGC AAAGTTGCTT 
GTGAGACATG CACCAAGACC AACATGGTCA TGGTCTTTGG TGAGATCACT 
ACCAAGGCTA CTGTTGACTA CGAGAAGATT GTCCGTGACA CCTGTCGCGC 
CATTGGATTT GTCTCTGATG ATGTTGGTCT TGATGCTGAC AAATGCAAAG 
TCCTAGTCAA CATTGAGCAA CAGAGCCCAG ACATTGCTCA AGGAGTTCAC 
GGTCACTTCA CCAAATGTCC TGAAGAAATT GGAGCCGGTG ACCAAGGGCA 
CATGTTTGGT TATGCCACTG ATGAAACCCC TGAGTTAATG CCCCTGAGCC 
ATGTTCTTGC CACCAAGCTC GGTGCTCGCC TAACAGAAGT CAGAAAGAAT 
GGTACTTGCG CCTGGCTAAG ACCTGACGGC AAAACCCAAG TCACTGTTGA 
GTACTACAAT GACAAGGGTG CCATGGTCCC AATCCGTGTC CACACAGTCC 
TCATCTCCAC CCAACACGAT GAAACTGTGA CCAACGACGA AATTGCCCGT 
GACCTTAAGG AGCATGTCAT CAAGCCAGTC ATCCCAGAGA AGTACCTAGA 
CGAGAAAACC ATCTTCCACT TGAACCCTTC AGGCCGATTC GTCATCGGTG 
GACCCCATGG AGACGCTGGT CTCACCGGGC GTAAGATCAT CATCGACACT 
TACGGTGGAT GGGGAGCTCA CGGAGGCGGT GCATTCTCAG GTAAAGACCC 
AACCAAGGTC GACAGAAGCG GAGCCTACAT TGTGAGACAA GCAGCTAAGA 
GCGTTGTGGC TAACGGGATG GCTCGTAGGG CTCTTGTTCA GGTCTCATAC 
GCCATTGGAG TCCCTGAGCC ATTGTCTGTC TTTGTGGACA CTTATGAGAC 
TGGATTGATT CCAGACAAGG AGATACTAAA GATTGTGAAG GAGAGCTTCG 
ACTTCAGACC AGGAATGATG ACAATTAACC TTGACCTAAA GAGAGGAGGA 
AACGGAAGGT TCTTGAAAAC TGCGGCTTAC GGACACTTTG GAAGAGACGA 
CCCTGACTTC ACCTGGGAAG TCGTCAAGCC ACTCAAGTGG GACAAACCTC 
AAGCTTAAAT TTTACCTACT CTGTTTCTGT CTTCATTCCA CAAACCAATT 
ATCTGCTCAC TTTTTTATTT CTCTGTTTTT GTGGTTTATT GTGTTTATGT 
ATCATTGTAC TTGAGCTATT TCAATTGGGT GTTTGTTTTT ATGGCGACTT 
TTACACGGCT TGGAGTAAGT TTCATGTTGT TCTTAT

Gene models with high sequence identity

  1. AT1G02500.1 [+] show detail - S-adenosylmethionine synthetase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan S-adenosylmethionine synthetase 0
PatternScan S-adenosylmethionine synthetase 0
Gene3D no description 9.4e-45
Gene3D no description 4.5e-40
Gene3D no description 1e-49
HMMPIR S-adenosylmethionine synthetase 8.1e-220
HMMPfam S-adenosylmethionine synthetase 7.4e-65
HMMPfam S-adenosylmethionine synthetase 1.7e-49
HMMPfam S-adenosylmethionine synthetase 1.9e-43
superfamily S-adenosylmethionine synthetase 4.2e-58
superfamily S-adenosylmethionine synthetase 4e-51
superfamily S-adenosylmethionine synthetase 1.9e-45
HMMTigr S-adenosylmethionine synthetase 9.7e-228
HAMAP S-adenosylmethionine synthetase 49.558
HMMPanther S-adenosylmethionine synthetase 6.6e-282

See the detailed result >

AT1G02500.1

Model type
Protein coding
Short Description
S-adenosylmethionine synthetase 1
Curator Summary
encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.
Computational Description
S-adenosylmethionine synthetase 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2); Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4149 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-C12 introduced

  • F21315 - Specific phenotypes were NOT observed.
  • F22941 - Specific phenotypes were NOT observed.
  • F25126 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found