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  3. RAFL04-17-D16

RAFL04-17-D16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00659)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-D16 - full reading 
ATTGTTAAAA GCTCTCACAC AACCACCGTT CTCCGTCACG GTGGCGCTTT 
ATTCTCTCAT CGGAGCGCCT CACCGGTGGC AGACGGTGTC GTTGTTCCTC 
TCCTAAAACC TCCATCAATC ACCATCTCTT TACACAGAGC TCTAACCAAA 
ATCTTCGAGA GATGGGGCAG AGTATGAGCT GTGGAAGTCG ACCGGAGCAC 
GGAATATTCG CCTCTGTACA GTGCGGCGAT ATCATCACTA TCCGTCGTGT 
GATGGCGACG GAGCCTAGTC TGTTGAATCA AACTACTCCT TATGATCGTC 
ACTCTGTTCT TCATGTCGCT GCTGCTAATG GTCAGATCGA GATTTTGTCA 
TTGCTTTTGG AACGATTTAC GAATCCAGAT TTGTTGAATC GTCACAAGCA 
GACTCCGTTA ATGTTGGCTG CGATGTATGG AAGAATCTCT TGTGTGAAGA 
AGCTAGCTGA AGTTGGAGCT AATATTTTGA TGTTTGATTC TGTGAATCGA 
AGAACATGTT TGCATTACGC TGCTTATTAT GGACATGCTA ATTGTGTTCA 
AGCTATTCTC TCTGCTGCTC AATCAAGTCC TGTTGCTGTC CATTGGGGAT 
ATGCGAGATT TGTGAACATA AGAGATGATA AAGGAGCGAC TCCGTTGCAT 
TTAGCTGCTC GACAGAGACG ACCTGAATGT GTGAATGTTT TGTTGGATAG 
TGGTTCTCTT GTTTGTGCAT CTACTAGTGT ATATGGTTCT CCAGGAAGCA 
CACCTCTTCA TTTAGCAGCT AGAAGTGGAT CTATAGATTG TGTCAGAAAG 
TTGCTTGCTT GGGGTGCTGA TCGTCTTCAA CGAGACGCTT CTGGGAGAAT 
ACCTTATGTG GTTGCGATGA AGCATAAGCA TGGAGCATGT GGAGCCTTAC 
TTAATCCGTC CTCTGCAGAG CCACTTGTTT GGCCATCACC ATTAAAGTTC 
ATCAGTGAGC TTAATGACGA GGCGAAACTT CTCTTAGAGC AGGCTTTAAT 
GGAGGCTAAC AGGGAGAGAG AGAAAACCAT CCTCAAAGGA ACAGCTTATT 
CCTTACCATC ACCCTCTTTC TCTGACACGG ATGATAACAT GTCCGAGGTG 
AGTGATACGG AACTGTGCTG CATTTGCTTT GAGCAAGTAT GTACAATTGA 
AGTTAAAGAC TGTGGTCACC AAATGTGTGC ACAATGCACA CTTGCACTGT 
GCTGTCACAA CAAACCAAAC CCAACGACCT CAACCGTGAC TCCACCGGTC 
TGTCCGTTCT GTAGAAGCAC CATTGCATGT TTAGTCGTCG CCCAGAACAA 
CAACAACAAC AACGAAAAGA GCAAAAGCCT AGATGATGTT GTTGTTGTTG 
ATCGTGAGGC AGGTGATGTT AGCTCCTCCA AATTCAGAAA ACATAGAAGA 
TCAATAAACC TTGGCGAAGA AAGCAGCAGC TTCATGGGAC TATCAACTAT 
TGGATCATTC GGTAGGATAA CCGGCCGTGG CTCGGGAAGG ATCGCAGCCG 
AAAACGAGCT GATGGACAAA CCAATATTGT GAGGGATCGA TTCCGTTTTA 
AGGGACATTT TGGGGCATGG GGGAGCAATA AAAAAGATGA GGGGATGAAA 
TTGTGAGAAT GTATAAAATA TAGATGAATT TATGTTAGAT CTTTTGTTGA 
AGGGAGGAAG ATTGAAATAA GGAAAAAGAT GTGGGGAGGT GTGTAATGCA 
AGGATTTGTT GTTTCTTTGA TTAAGTTTGG CCAAAATTGT TTGTTGTTGT 
TATTATTTGG TTACTTGATA TGAAAGGGAA ACC

Gene models with high sequence identity

  1. AT2G28840.1 [+] show detail - XB3 ortholog 1 in Arabidopsis thaliana
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ankyrin repeat 0.0032
HMMSmart Ankyrin repeat 0.00082
HMMSmart Ankyrin repeat 0.0035
HMMSmart Ankyrin repeat 0.003
HMMSmart Ankyrin repeat 0.049
Coil coiled-coil 0
superfamily Ankyrin repeat-containing domain 7.8e-55
superfamily RING/U-box 0.000000011
ProfileScan Ankyrin repeat 10.286
ProfileScan Ankyrin repeat 10.392
ProfileScan Ankyrin repeat 11.14
ProfileScan Ankyrin repeat 12.876
ProfileScan Zinc finger, RING-type 9.48
ProfileScan Ankyrin repeat-containing domain 40.903
HMMPanther RECEPTOR-LIKE KINASE XA21-BINDING PROTEIN 3 2.7e-250
HMMPanther ANKYRIN REPEAT-CONTAINING 2.7e-250
Gene3D Ankyrin repeat-containing domain 1.7e-45
HMMPfam Ankyrin repeat 0.000031
HMMPfam Ankyrin repeat 0.000098
HMMPfam Ankyrin repeat 0.000014
HMMPfam Ankyrin repeat 0.00000031

See the detailed result >

AT2G28840.1

Model type
Protein coding
Short Description
XB3 ortholog 1 in Arabidopsis thaliana
Computational Description
XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-D16 introduced

  • F10435 - Specific phenotypes were NOT observed.
  • F17305 - Specific phenotypes were NOT observed.
  • F17817 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::abnormal / fruit::abnormal
  • F18023 - Specific phenotypes were NOT observed.
  • F20514 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found