1. Home
  2. Full-length cDNAs
  3. RAFL04-17-E23

RAFL04-17-E23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00633)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-E23 - full reading 
AGTCATGTTT CCATAGACAT AATCTCTCAC CATTGTTTTT CTCTGCAAAA 
CTAAAGAAAC AAAAAAAGAA AAATCGGAGA AACCAAGAAA AAAGAAATGG 
GAAGTGTAGA AGCAGGAGAA AAGAAGGCTT TAGGATGGGC TGCAAGAGAT 
CCTTCTGGTG TTCTCTCTCC TTACTCCTAC ACTTTAAGGA GCACAGGAGC 
AGATGATGTG TATATAAAGG TTATATGCTG TGGAATATGC CATACTGATA 
TTCACCAAAT TAAAAATGAT CTTGGAATGT CTAATTATCC TATGGTTCCT 
GGGCACGAGG TAGTAGGTGA GGTGTTGGAA GTGGGATCAG ATGTGAGCAA 
GTTCACCGTA GGAGATGTAG TCGGAGTCGG CGTGGTCGTT GGATGCTGCG 
GTAGCTGCAA ACCATGCAGC TCAGAACTTG AGCAGTATTG TAACAAGAGA 
ATCTGGAGTT ACAACGATGT CTACACCGAT GGAAAACCTA CTCAAGGTGG 
CTTCGCCGAC ACCATGATCG TCAATCAAAA GTTTGTGGTG AAGATTCCAG 
AAGGAATGGC GGTGGAGCAG GCTGCACCGC TACTCTGCGC GGGAGTAACG 
GTTTATAGTC CGTTGAGCCA CTTCGGTCTA ATGGCGAGTG GGCTTAAAGG 
AGGGATTCTA GGGTTAGGTG GAGTAGGGCA CATGGGTGTG AAGATAGCTA 
AAGCAATGGG ACACCATGTG ACTGTGATAA GCTCAT

Gene models with high sequence identity

  1. AT3G19450.1 [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily GroES-like 6.3e-49
superfamily NAD(P)-binding domain 0.0000000043
Gene3D no description 3.8e-55
PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 2.6e-65
HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 2.6e-65
HMMPfam Alcohol dehydrogenase GroES-like 2.6e-27

See the detailed result >

AT3G19450.1

Model type
Protein coding
Short Description
GroES-like zinc-binding alcohol dehydrogenase family protein
Curator Summary
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational Description
ATCAD4; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 5 (TAIR:AT4G34230.1); Has 40533 Blast hits to 40509 proteins in 3018 species: Archae - 756; Bacteria - 27152; Metazoa - 1406; Fungi - 3053; Plants - 2651; Viruses - 3; Other Eukaryotes - 5512 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-E23 introduced

  • F11535 - Specific phenotypes were NOT observed.
  • F15403 - Specific phenotypes were NOT observed.
  • F18010 - rosette leaf::present in greater numbers in organism / stem::decreased thickness / stem::abnormal / stem::abnormal / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in fewer numbers in organism / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found