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RAFL04-17-F01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87408)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL04-17-F01 - 5 prime EST
GAAATATGCA AACTAGAAAA CAATCATCAG GAATAAAGGG TTTGATTACT 
TCTATTGGAA AGAAAAAAAT CTTTGGAAAA TGGATCAAAC AGAGGAACCA
CCACTCAACA NACACCAGCA GCACCCAGAA GAAGTTGAAC ATCATGAGAA
TGGTGCGACT AAGATGTTTA GGAAAGTAAA GGCTAGAGCT AAGAAGTTCA
AGAACAGTCT CACTAAACAT GGACAAAGCA ATGAGCATGA GCAAGATCAT
GATTTGGTTG AAGAAGATGA TGATGATGAC GAGCTAGAAC CTGNAGTGAT
CGATGCACCA GGCGTAACAG GTAAACCTAG AGAAACTAAT GTTCCAGCAT
CGGAGGAAAT TATTNCACCA GGGACAAAGG TGTTT

Gene models with high sequence identity

  1. AT5G52310.1 [+] show detail - low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
    E-value: 0; Score: 99.22

3 prime EST [+] show sequence

Nucleotide sequence: RAFL04-17-F01 - 3 prime EST
AATCCAAAGC CGAACAATTT ATTAACCAAA TGTCCTTTTT TCACACAAAC 
AAGGAATTAT ACCATAATAC ATCAAAGACG TCAAACAAAA CACACATAAA
CATCCAAAGT GAAACTTGAA AATCTCAGTT CTCATATTCT TAAAGCTCCT
TCTGCACCGG AACAACAGTG GAGCCAAGTG ATTGTGGAGA CTCTTCAACG
GAATGAGGCG ATTTTGGCTT CACCTCCTCC GTCGCACCAC CACCAAACCA
GCCAGATGAT TTTGGAGCCT CTTCAACAGA ATGTGGCGAT TCTGGCTTCA
CCTCATCAGT CGCACCACCA CCGAACCATC CTTTAATCCT CCCAACCATT
CCTCCTCCTC CTTTCACTTC CTCTTCCACC GCCTCACCCT CCTCCGATGC
TGCCTTCTCG GTAGAGATCT TCTCCACTTC CTTTGTCGTC GTTTCCTTCT
TCTCTTCTTC TCCTCCAATC TGAAGTTTCT CGGCAACCAT ATCAGAAAAG
GCTTTGTCTT CTTCTTCAGT TG

Gene models with high sequence identity

  1. AT5G52310.1 [+] show detail - low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
    E-value: 0; Score: 100.00

AT5G52310.1

Model type
Protein coding
Short Description
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Curator Summary
cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression
Computational Description
LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.2); Has 4951 Blast hits to 3145 proteins in 397 species: Archae - 10; Bacteria - 1464; Metazoa - 1621; Fungi - 447; Plants - 293; Viruses - 46; Other Eukaryotes - 1070 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-F01 introduced

  • F13622 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed / whole plant flowering stage::late / rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::abnormal / stem::abnormal / stem internode::decreased length / fruit::abnormal
  • F30523 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found