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  3. RAFL04-17-H03

RAFL04-17-H03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00619)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-H03 - full reading 
GTTACTTTAA AGCCAAAAAG AAGAATACAC AAACTTCATT CACTCTCTCC 
CATTCTCGGA TCTCTCTCAG TGCACAGTGG TTGTCACTCT TCTCCTTTGG 
TCGAAACTCT TTCTTGGAAA GAGCATTTTG TTATCAAGAC TCTGAAGAGC 
TCTTTTGGGA GGATAGTAAG GTTGGATGAT GAGAGGGAGA TCTGATGGAG 
GCCTAAAGAA GCGGCTTATT GCTTCGGTCT GTGTCGTGGC TCTATTCGTC 
TGTTTCTTGT TTATGTACTA TGGTTCCTCT AGCCAAGGTG CATCAGCATT 
GGAATATGGA AGATCTTTGA GAAAACTCGG ATCGTCTTAT TTGAGTGGAG 
ATGATGATAA TGGTGATACC AAACAGGATG ATTCTGTGGC TAATGCAGAA 
GACAGTCTTG TTGTCGCCAA AAGTTTTCCT GTTTGTGATG ACCGGCACTC 
GGAAATCATC CCTTGCTTAG ATAGGAATTT CATCTACCAA ATGAGGTTGA 
AGCTTGATCT CTCTTTAATG GAACATTATG AACGGCATTG TCCTCCTCCC 
GAAAGACGGT TTAATTGTTT GATTCCTCCA CCATCTGGAT ACAAGGTTCC 
TATTAAGTGG CCTAAGAGTA GAGATGAAGT GTGGAAAGCA AACATACCTC 
ACACTCACCT TGCAAAAGAG AAGTCTGATC AGAACTGGAT GGTTGAGAAA 
GGCGAGAAAA TTTCTTTTCC CGGTGGAGGC ACTCATTTCC ATTGCGGTGC 
TGATAAATAC ATTGCATCGA TCGCAAATAT GCTTAACTTT TCGAACGATG 
TATTGAATGA CGAAGGGAGA TTAAGAACGG TTCTTGATGT CGGATGCGGA 
GTTGCGAGTT TTGGAGCTTA CCTTCTCGCG TCTGATATAA TGACAATGTC 
ACTAGCCCCT AATGATGTTC ATCAGAACCA AATCCAGTTT GCGTTAGAAA 
GAGGAATCCC TGCTTATCTT GGTGTTTTAG GTACCAAAAG GCTTCCTTAC 
CCGAGCAGAT CATTCGAGTT TGCTCATTGT TCTCGATGTA GGATTGATTG 
GCTTCAAAGA GACGGACTTC TTCTTCTTGA GCTCGATCGG GTACTAAGAC 
CGGGAGGTTA TTTCGCGTAT TCGTCTCCTG AAGCTTACGC ACAAGATGAA 
GAGAATTTGA AAATCTGGAA GGAGATGAGT GCTCTTGTTG AAAGAATGTG 
TTGGAGAATT GCCGTTAAAA GAAACCAAAC TGTGGTTTGG CAGAAACCGT 
TGAGTAATGA CTGTTACTTG GAGAGAGAGC CCGGGACACA GCCTCCTCTC 
TGTCGCTCAG ATGCTGATCC TGATGCGGTT GCGGGTGTTT CAATGGAAGC 
TTGCATCACT CCTTACTCCA AGCATGACCA TAAAACCAAG GGAAGTGGGT 
TAGCTCCTTG GCCAGCTAGG TTGACTTCTT CTCCTCCCCG TCTTGCGGAT 
TTCGGTTATT CAACCGACAT GTTTGAGAAG GACACGGAAC TTTGGAAACA 
ACAAGTGGAC AGTTACTGGA ATCTGATGTC ATCGAAAGTC AAATCAAACA 
CTGTGAGGAA CATAATGGAC ATGAAAGCTC ACATGGGTTC TTTCGCAGCT 
GCTCTTAAAG ACAAAGATGT GTGGGTGATG AACGTTGTCT CTCCCGACGG 
TCCCAACACT CTAAAACTGA TCTACGACCG TGGTTTAATC GGAACAAATC 
ATAACTGGTG TGAGGCTTTC TCTACATATC CTCGAACATA CGATCTGTTG 
CACGCGTGGT CTATATTTTC AGACATTAAA AGCAAAGGAT GCAGTGCAGA 
GGATCTACTA ATCGAGATGG ATCGGATTCT TAGACCTACG GGATTCGTTA 
TCATCAGAGA TAAGCAGAGT GTTGTTGAGT CAATCAAGAA GTATTTGCAG 
GCTTTGCATT GGGAGACTGT GGCATCAGAG AAGGTAAATA CAAGTTCAGA 
ACTCGACCAA GACAGTGAAG ATGGTGAGAA CAATGTCGTT TTCATTGTCC 
AGAAGAAACT TTGGCTCACC AGTGAAAGCC TTAGGGACAG CGAGTAAAAA 
ACATATCAAA AGCAAAGAGA GAGAAATTGT TTTATCCCAC AAAGTTTTTA 
TATAGTTTTA TTTTGATTTT TGTAGTTGAT TTGTACGACA TAAAGCATTA 
TTATATAAAA TACTAAAATT ATTCA

Gene models with high sequence identity

  1. AT1G04430.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.4e-05
superfamily S-adenosyl-L-methionine-dependent methyltrans 6.8e-23
superfamily S-adenosyl-L-methionine-dependent methyltrans 7.9e-09
HMMPfam Protein of unknown function DUF248, methyltransferase putative 3.1e-226

See the detailed result >

AT1G04430.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1); Has 1231 Blast hits to 1208 proteins in 77 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 1110; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-H03 introduced

  • F17113 - Specific phenotypes were NOT observed.
  • F17936 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found