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  3. RAFL04-17-H07

RAFL04-17-H07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02348)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-H07 - full reading 
AAGTGCCGGC GAACCCTAAG ACTTTTGATA CCTCTTCTCT TCTCTCTCTT 
CGAAGATGTC TCTCTCTTCC CTCACTCTCG ACTCCAATCC AAGATTCGCT 
GTTGGTGGAC CTTATCACCG CCGTTATCCT CCTCTTCACC ACCCTCGAAG 
CTTCGTCTCT TGCTCTGCTA AACGTCCAGC TGTCTCCGCT TCACTGAGCG 
TCGCCGCTGA TTCAGCCGCC ACTGAGTCTC TTGGACGGAT TGGATCACTG 
AGTCAAGTAT CTGGTGTACT CGGTTGCCAA TGGGGAGATG AAGGTAAAGG 
CAAACTCGTT GACATCTTAG CCCAACACTT TGACATCGTT GCTCGTTGTC 
AGGGTGGAGC TAATGCTGGA CACACTATAT ACAATTCAGA GGGAAAGAAA 
TTTGCACTTC ACCTTGTGCC TTCAGGTATC CTGAATGAGG ATACTACTTG 
TGTCATTGGA AACGGAGTTG TGGTGCATTT GCCAGGTCTC TTCAAAGAGA 
TTGATGGTTT GGAGTCCAAT GGTGTCTCCT GTAAAGGAAG GATTTTGGTC 
TCTGATCGCG CTCACTTGTT ATTCGATTTC CATCAAGAGG TTGATGGGCT 
CAGGGAATCT GAGCTTGCCA AGTCGTTCAT TGGCACCACC AAGAGGGGAA 
TTGGTCCTGC CTACTCTAGT AAAGTGATAA GGAATGGTAT TAGAGTAGGT 
GATCTCAGGC ACATGGATAC TTTACCTCAA AAGCTTGACC TTTTACTATC 
AGATGCAGCG GCAAGGTTTC AAGGGTTCAA GTATACTCCT GAAATGCTTC 
GGGAAGAAGT TGAAGCATAC AAGAGATACG CTGACAGATT GGAGCCCTAC 
ATTACTGACA CTGTCCATTT CATCAATGAC TCGATTTCGC AGAAGAAAAA 
GGTTTTGGTC GAAGGTGGTC AAGCTACAAT GTTGGACATT GACTTTGGGA 
CTTATCCTTT TGTTACTTCC TCCAGCCCCT CAGCCGGTGG GATCTGCACA 
GGTCTTGGTA TTGCACCAAG TGTTGTTGGT GATCTAATTG GAGTGGTAAA 
AGCATACACT ACAAGAGTTG GTTCAGGTCC ATTCCCGACA GAAAATTTGG 
GCACAGGTGG TGACCTTCTT AGGTTAGCTG GACAGGAGTT TGGCACTACA 
ACTGGTCGTC CTCGTCGGTG TGGCTGGCTT GACATTGTTG CCCTGAAATT 
TTCTTGCCAA ATCAATGGAT TTGCATCACT TAATCTCACT AAGCTTGATG 
TACTTTCGGA TCTGAACGAA ATCCAGCTGG GTGTGGCTTA CAAGAGGAGT 
GACGGCACCC CTGTTAAATC ATTCCCTGGT GATCTTCGTC TTCTCGAAGA 
ACTGCATGTG GAGTATGAAG TCTTACCTGG GTGGAAGTCT GACATATCCT 
CGGTCAGAAA CTACTCTGAT CTTCCAAAGG CTGCTCAGCA ATATGTTGAG 
AGGATTGAAG AACTCGTGGG TGTGCCCATT CATTACATTG GTATTGGGCC 
CGGTCGTGAT GCCCTTATAT ATAAATGATT TTTAGTGTTA GGCTTTTTTG 
GTTCCTCCAC AAACTCAAAA ATTGATCAAG TGTCAAGTTA CTGAGAATTA 
TTACTCTCTT TGGAATGACT AGTGTATCTG TTGCATTGTT TCTAATATTG 
GAATGAAGAG GAATTCTGTG CTTAAGCAGT GAGGTTGCTA TATTCATAAT 
GTTTAAGCTT TCGTGTT

Gene models with high sequence identity

  1. AT3G57610.1 [+] show detail - adenylosuccinate synthase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 6e-169
HMMTigr Adenylosuccinate synthetase 4.2e-155
HMMSmart Adenylosuccinate synthetase 7.2e-245
HMMPanther Adenylosuccinate synthetase 1.1e-238
HAMAP Adenylosuccinate synthetase 31.735
PatternScan Adenylosuccinate synthase, active site 0
PatternScan Adenylosuccinate synthase, active site 0
HMMPfam Adenylosuccinate synthetase 4.1e-162
Gene3D no description 7.2e-58
Gene3D no description 2.7e-59

See the detailed result >

AT3G57610.1

Model type
Protein coding
Short Description
adenylosuccinate synthase
Curator Summary
encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)
Computational Description
adenylosuccinate synthase (ADSS); FUNCTIONS IN: adenylosuccinate synthase activity; INVOLVED IN: response to cadmium ion, purine ribonucleotide biosynthetic process, AMP biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenylosuccinate synthase, active site (InterPro:IPR018220), Adenylosuccinate synthetase (InterPro:IPR001114); Has 10496 Blast hits to 10490 proteins in 2781 species: Archae - 222; Bacteria - 5613; Metazoa - 213; Fungi - 143; Plants - 71; Viruses - 18; Other Eukaryotes - 4216 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-H07 introduced

  • F06045 - seed::increased size / seed::increased length
  • F06115 - seed::increased length
  • F08215 - rosette leaf::increased size / rosette leaf::abnormal / cauline leaf::decreased size / root::present in greater numbers in organism / rosette leaf::dark green / rosette leaf::dark green / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::abnormal / whole plant::decreased height / whole plant::decreased height / stem internode::decreased length
  • F17444 - Specific phenotypes were NOT observed.
  • F22139 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found