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RAFL04-17-H07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02348)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-H07 - full reading
AAGTGCCGGC GAACCCTAAG ACTTTTGATA CCTCTTCTCT TCTCTCTCTT 
CGAAGATGTC TCTCTCTTCC CTCACTCTCG ACTCCAATCC AAGATTCGCT
GTTGGTGGAC CTTATCACCG CCGTTATCCT CCTCTTCACC ACCCTCGAAG
CTTCGTCTCT TGCTCTGCTA AACGTCCAGC TGTCTCCGCT TCACTGAGCG
TCGCCGCTGA TTCAGCCGCC ACTGAGTCTC TTGGACGGAT TGGATCACTG
AGTCAAGTAT CTGGTGTACT CGGTTGCCAA TGGGGAGATG AAGGTAAAGG
CAAACTCGTT GACATCTTAG CCCAACACTT TGACATCGTT GCTCGTTGTC
AGGGTGGAGC TAATGCTGGA CACACTATAT ACAATTCAGA GGGAAAGAAA
TTTGCACTTC ACCTTGTGCC TTCAGGTATC CTGAATGAGG ATACTACTTG
TGTCATTGGA AACGGAGTTG TGGTGCATTT GCCAGGTCTC TTCAAAGAGA
TTGATGGTTT GGAGTCCAAT GGTGTCTCCT GTAAAGGAAG GATTTTGGTC
TCTGATCGCG CTCACTTGTT ATTCGATTTC CATCAAGAGG TTGATGGGCT
CAGGGAATCT GAGCTTGCCA AGTCGTTCAT TGGCACCACC AAGAGGGGAA
TTGGTCCTGC CTACTCTAGT AAAGTGATAA GGAATGGTAT TAGAGTAGGT
GATCTCAGGC ACATGGATAC TTTACCTCAA AAGCTTGACC TTTTACTATC
AGATGCAGCG GCAAGGTTTC AAGGGTTCAA GTATACTCCT GAAATGCTTC
GGGAAGAAGT TGAAGCATAC AAGAGATACG CTGACAGATT GGAGCCCTAC
ATTACTGACA CTGTCCATTT CATCAATGAC TCGATTTCGC AGAAGAAAAA
GGTTTTGGTC GAAGGTGGTC AAGCTACAAT GTTGGACATT GACTTTGGGA
CTTATCCTTT TGTTACTTCC TCCAGCCCCT CAGCCGGTGG GATCTGCACA
GGTCTTGGTA TTGCACCAAG TGTTGTTGGT GATCTAATTG GAGTGGTAAA
AGCATACACT ACAAGAGTTG GTTCAGGTCC ATTCCCGACA GAAAATTTGG
GCACAGGTGG TGACCTTCTT AGGTTAGCTG GACAGGAGTT TGGCACTACA
ACTGGTCGTC CTCGTCGGTG TGGCTGGCTT GACATTGTTG CCCTGAAATT
TTCTTGCCAA ATCAATGGAT TTGCATCACT TAATCTCACT AAGCTTGATG
TACTTTCGGA TCTGAACGAA ATCCAGCTGG GTGTGGCTTA CAAGAGGAGT
GACGGCACCC CTGTTAAATC ATTCCCTGGT GATCTTCGTC TTCTCGAAGA
ACTGCATGTG GAGTATGAAG TCTTACCTGG GTGGAAGTCT GACATATCCT
CGGTCAGAAA CTACTCTGAT CTTCCAAAGG CTGCTCAGCA ATATGTTGAG
AGGATTGAAG AACTCGTGGG TGTGCCCATT CATTACATTG GTATTGGGCC
CGGTCGTGAT GCCCTTATAT ATAAATGATT TTTAGTGTTA GGCTTTTTTG
GTTCCTCCAC AAACTCAAAA ATTGATCAAG TGTCAAGTTA CTGAGAATTA
TTACTCTCTT TGGAATGACT AGTGTATCTG TTGCATTGTT TCTAATATTG
GAATGAAGAG GAATTCTGTG CTTAAGCAGT GAGGTTGCTA TATTCATAAT
GTTTAAGCTT TCGTGTT

Gene models with high sequence identity

  1. AT3G57610.1 [+] show detail - adenylosuccinate synthase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 6e-169
HMMTigr Adenylosuccinate synthetase 4.2e-155
HMMSmart Adenylosuccinate synthetase 7.2e-245
HMMPanther Adenylosuccinate synthetase 1.1e-238
HAMAP Adenylosuccinate synthetase 31.735
PatternScan Adenylosuccinate synthase, active site 0
PatternScan Adenylosuccinate synthase, active site 0
HMMPfam Adenylosuccinate synthetase 4.1e-162
Gene3D no description 7.2e-58
Gene3D no description 2.7e-59

See the detailed result >

AT3G57610.1

Model type
Protein coding
Short Description
adenylosuccinate synthase
Curator Summary
encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)
Computational Description
adenylosuccinate synthase (ADSS); FUNCTIONS IN: adenylosuccinate synthase activity; INVOLVED IN: response to cadmium ion, purine ribonucleotide biosynthetic process, AMP biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenylosuccinate synthase, active site (InterPro:IPR018220), Adenylosuccinate synthetase (InterPro:IPR001114); Has 10496 Blast hits to 10490 proteins in 2781 species: Archae - 222; Bacteria - 5613; Metazoa - 213; Fungi - 143; Plants - 71; Viruses - 18; Other Eukaryotes - 4216 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-H07 introduced

  • F06045 - seed::increased size / seed::increased length
  • F06115 - seed::increased length
  • F08215 - rosette leaf::increased size / rosette leaf::abnormal / cauline leaf::decreased size / root::present in greater numbers in organism / rosette leaf::dark green / rosette leaf::dark green / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::abnormal / whole plant::decreased height / whole plant::decreased height / stem internode::decreased length
  • F17444 - Specific phenotypes were NOT observed.
  • F22139 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found