1. Home
  2. Full-length cDNAs
  3. RAFL04-17-H15

RAFL04-17-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00628)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-H15 - full reading
ATACAATGCT ACGATCCACT TGCTGCACTC CACTTTGCCC TTTCACGGCG 
AAACAACCTT CTTTCCTTAG GAAACAGCAA CGTATTACCT CTGATCGCTT
CACCTTTCGC GGTGGTGGTG GTGGCGATGC CGCCGCCGTC GTCTCCTCCT
CCGGCCTCCG TGATCTCGTT TTCGTCGTAA ACCCTCAAGG TGCTAATGGT
AGAACAGCTA AAGAATGGAA GAAGTTGCTT CCTCACCTTC GATCTCGTCT
TGGTAAAGAC TGTAATGTAA GTGAATTATT AACATCGGGT CCTTCTCATG
CCATTGACAT TACAAGAGAG GCTATAAGGG ATGGTGCAGA TGCTGTCATT
GCGGTTGGAG GTGATGGAAC ACTTCATGAG GTTGTTAATG GTTTCTTTTG
GGAGGGGAAA CCTGTCGGTT ATCTCAGTGG GGAAGCTAGT CGATCGACTG
CACTTGGTCT GATTCCCTTA GGTACTGGCT CAGATTTTGC TAGAACATTT
GGTTGGAACA ATGATCCTTG TGAAGCAGTG GAGCGCATTG CTAGAGGGAT
GCGATCACGG ATTGATGTTG GTGTTATCGA CAAGGAAGGA AAGGATTTGC
ATTACTTCAT CAATGTAGCT GATGTTCATT TGAGCGCAGG CAGGATTTTA
CGCTTCAAAA TACAAGAAAT TTGGAAACTT GTGCTACGTA ATTGGTGCCC
TACAAGCGTT CATGGGCCAT CATAACCAAG ATATGAGAAT CAGAGTCAAT
GGAGGCGAAT GGGAAATATA TCCCCAGGTC ACTGCTCTCT GCGTTGGAAA
CGCAAAATAC TTTGGTGGTG GAATGAAAAT CACACCCAAC GCCATCCCTG
GAAATGGAAA TCTTGAGGTT GTGGTTCTTC AAAACTTCAA ATGGTATGAT
TTCGTACTTA AACTTCATAA GCTGTACAAC GGGACTCATC TTTCGGTTAA
CAATGTGACT TCAAGAAGTG TACAAAGCAT CGAAGTTGAA GAGATTACAG
ACAGTGGAAG TATCTATGTG CAGTCAGATG GAGAACATCT TGGATTCCTA
CCTAGAAAGT TTCAGGTGTT ACCCGGTGCC ATAGACATAA TCAGCTGATC
AAAACCGCAG ATTTCTTAGG ATAAACTTGT CAAGTAAAGT GTAGAATACT
TCAACTTTAT ATTCTTCCTG TAATATGATT CATTGTTTAG CGAATCAGAT
TTATGCTCGT GTTACTTGTG TAACTCGTTA CTATCACTAT TTATTGTGTG
GTCTCTGTTA ACCACAAATA GATACTTTAA AAC

Gene models with high sequence identity

  1. AT2G46090.1 [+] show detail - Diacylglycerol kinase family protein
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
HMMSmart Diacylglycerol kinase, catalytic domain 3.1e-06
ProfileScan Diacylglycerol kinase, catalytic domain 34.745
HMMPanther BMRU PROTEIN 1.1e-49
HMMPanther SPHINGOSINE KINASE 1.1e-49
HMMPanther BMRU PROTEIN 2.3e-23
HMMPanther SPHINGOSINE KINASE 2.3e-23
HMMPfam Diacylglycerol kinase, catalytic domain 4.4e-32

See the detailed result >

AT2G46090.1

Model type
Protein coding
Short Description
Diacylglycerol kinase family protein
Curator Summary
Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.
Computational Description
Diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Conserved hypothetical protein CHP00147 (InterPro:IPR005218); BEST Arabidopsis thaliana protein match is: long-chain base (LCB) kinase 1 (TAIR:AT5G23450.2); Has 6078 Blast hits to 6077 proteins in 1657 species: Archae - 15; Bacteria - 4829; Metazoa - 327; Fungi - 124; Plants - 145; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-H15 introduced

  • F22151 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found