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RAFL04-17-H20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00572)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-H20 - full reading 
AAAACCTCTC GTCTTCTCAA ATCCACTCTC ATACACAGTC ACAACAATGG 
CTCTTTCTTC TGGAATCTTC TCTACTACTT TTCTCTGCGT CGATACGGCG 
CCGTTGCGCA GCTCAATGTT GACTCCATCT TCGCTCCGTT TGTCCCCTAA 
TCATCCGACT AACCTGCGCA TGGTTCGAGC TGTAACTTCC GCGGCGGCGG 
CTTCCTCCGA CCCGACAACC ACGACCAAGA CTCGGGAGCC ACGTGGCATC 
ATGAAGCCTC GTCCAGTGTC CCAGGCGATG CAGGATGTCG TTGGCGTTCC 
TGAAATCCCT CGTACTCAAG CTCTCAAACG CATTTGGGCT TACATCAAGG 
AACATGACCT TCAAGACCCA CAAAACAAGA GGGATATACT GTGCGACGAG 
AAGCTGAAGA AGATATTTGA AGGCAAAGAA CGTGTTGGGT TCTTGGAGAT 
TGCAAAACTC ATTGGTCCTC ACTTTCTCTG AATGAATTTT GGCTGAGAGA 
AGACAATCAT TGGCCTATGT TTTCCTGAGC TACTAAAGGC CATGAAAGAT 
CAGATTACAT ATTAGTAAAT TTAGGGTTTA AGAAGTTTTT ATGCAACCAA 
GTAGTTTATA AGCCTTTGGA GGATATCTTA TGTCGGTTAT GTGCTCATTT 
GCTTTCCCAA TGCAGTTAAA ATATTCCTCT CTTTTTTTTT TTTTTTTTGT 
CTTAGGACTT GAAATCTCTC TAATGCATGA AGTAATGCTT TTAT

Gene models with high sequence identity

  1. AT4G34290.1 [+] show detail - SWIB/MDM2 domain superfamily protein
    E-value: 0; Score: 99.33

 

InterPro Scan Digest

Program Description E-value
Gene3D SWIB/MDM2 domain 3.8e-23
HMMPanther BRG-1 ASSOCIATED FACTOR 60 (BAF60) 0.0000001
superfamily SWIB/MDM2 domain 6.1e-27
HMMPfam SWIB/MDM2 domain 4e-29
HMMSmart SWIB domain 1.1e-37

See the detailed result >

AT4G34290.1

Model type
Protein coding
Short Description
SWIB/MDM2 domain superfamily protein
Computational Description
SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G14880.1); Has 1224 Blast hits to 1123 proteins in 258 species: Archae - 0; Bacteria - 216; Metazoa - 147; Fungi - 184; Plants - 430; Viruses - 12; Other Eukaryotes - 235 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-H20 introduced

  • F07148 - Specific phenotypes were NOT observed.
  • F13916 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width

Mutant lines with disrupted or induced

2 mutant lines found