1. Home
  2. Full-length cDNAs
  3. RAFL04-17-L07

RAFL04-17-L07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00648)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-L07 - full reading 
ACTACGATAG TTTTCTTCAG CAATCACACT CTCTCTTTGT TCGAGTACCA 
ACAATGGCCC TTCAAGCTGC TTCTTTGGTC TCCTCTGCTT TCTCTGTTCG 
CAAAGATGCG AAGTTGAATG CTTCTTCATC ATCTTTCAAG GACTCGAGTC 
TTTTTGGTGC CTCCATTACC GACCAAATCA AATCCGAACA TGGATCTTCC 
TCGTTAAGAT TCAAGAGAGA ACAGAGCTTA AGGAATCTAG CAATTCGAGC 
CCAAACCGCT GCGACTTCAA GCCCTACAGT TACAAAATCC GTGGACGGCA 
AGAAAACGTT GAGGAAAGGA AATGTGGTGG TCACTGGAGC CTCGTCTGGG 
TTAGGTCTAG CCACGGCTAA AGCTCTAGCT GAGACAGGGA AATGGAACGT 
GATAATGGCG TGCAGAGACT TCCTTAAAGC CGAGAGAGCT GCTAAATCCG 
TAGGGATGCC TAAAGACAGC TACACAGTGA TGCATTTAGA CTTAGCCTCG 
TTGGACAGCG TGAGACAGTT TGTTGATAAT TTCAGGAGAA CAGAGACGCC 
TCTCGATGTT TTGGTCTGCA ATGCTGCGGT TTATTTCCCG ACAGCTAAAG 
AGCCTACTTA CAGTGCTGAA GGGTTTGAGC TTAGTGTTGC GACGAACCAT 
TTGGGACATT TTCTTCTCGC AAGGTTGTTG CTTGATGACT TGAAGAAATC 
TGATTACCCT TCAAAGCGTC TCATCATCGT CGGATCCATT ACCGGGAACA 
CGAATACATT GGCGGGTAAT GTACCACCGA AGGCGAATCT CGGGGATTTG 
AGGGGTTTAG CCGGCGGATT AAACGGTTTA AACAGCTCAG CTATGATTGA 
TGGAGGAGAT TTCGACGGTG CAAAGGCTTA CAAAGACAGT AAAGTCTGCA 
ATATGTTGAC AATGCAAGAG TTTCACAGGC GTTTCCATGA AGAAACTGGA 
GTCACTTTCG CTTCGCTTTA CCCCGGTTGC ATCGCCTCCA CAGGTTTATT 
CCGAGAGCAC ATTCCTCTCT TCCGTGCCCT CTTCCCTCCC TTTCAGAAGT 
ACATCACTAA AGGATATGTC TCCGAAACAG AGTCAGGCAA AAGACTTGCT 
CAGGTGGTGA GTGATCCAAG CTTGACGAAA TCAGGGGTTT ATTGGAGCTG 
GAACAATGCT TCGGCTTCTT TTGAGAACCA GTTATCAGAA GAAGCAAGTG 
ACGTTGAGAA GGCTCGTAAA GTGTGGGAGA TCAGTGAGAA GCTCGTGGGC 
TTGGCCTAAT AAACTTGAAG TCTGTTAAAT TTGATGACAC CTCTCGGTAC 
CAATCGAAGA AATCTAGTGA ATTTCCGGGA TTTTTAGATA TCTGATTCTG 
TTGCGAAGTT TTTTTATCCT TATTAGTGTC TGTTGAGTGT AGATTGCTTG 
GCGAGTAGCC CACAATAAAG AAATAAAAAT GGCGAATCTT TAGCTTTATT 
TACTCTGTTT TTCATCGAAA CAGATTCAGT AATATATACT CTGTTTTT

Gene models with high sequence identity

  1. AT4G27440.1 [+] show detail - protochlorophyllide oxidoreductase B
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
FPrintScan Glucose/ribitol dehydrogenase 3.5e-07
FPrintScan Glucose/ribitol dehydrogenase 3.5e-07
FPrintScan Glucose/ribitol dehydrogenase 3.5e-07
HMMTigr Light-dependent protochlorophyllide reductase 1.4e-251
HMMPfam Short-chain dehydrogenase/reductase SDR 1.7e-18
HMMPanther PROTOCHLOROPHYLLIDE REDUCTASE 1.4e-181
HMMPanther Short-chain dehydrogenase/reductase SDR 1.4e-181
Gene3D NAD(P)-binding domain 7.2e-41
superfamily NAD(P)-binding domain 1.3e-40

See the detailed result >

AT4G27440.1

Model type
Protein coding
Short Description
protochlorophyllide oxidoreductase B
Curator Summary
light-dependent NADPH:protochlorophyllide oxidoreductase B
Computational Description
protochlorophyllide oxidoreductase B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 19396 Blast hits to 19385 proteins in 2086 species: Archae - 175; Bacteria - 10514; Metazoa - 1820; Fungi - 1776; Plants - 1038; Viruses - 0; Other Eukaryotes - 4073 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-L07 introduced

  • F05915 - Specific phenotypes were NOT observed.
  • F14442 - rosette leaf::desaturated green / rosette leaf::increased size / cauline leaf::decreased size / cauline leaf::decreased width / root::present in greater numbers in organism
  • F15716 - stem::desaturated green / cauline leaf::epinastic / whole plant::decreased height / stem internode::decreased length / stem::abnormal
  • F21129 - rosette leaf::desaturated green / stem::desaturated green / cauline leaf::desaturated green / rosette leaf::desaturated green / rosette leaf::increased width / stem::desaturated green / cauline leaf::desaturated green
  • F23012 - Specific phenotypes were NOT observed.
  • F27141 - rosette leaf::desaturated green / rosette leaf::abnormal / rosette leaf::increased width / stem::abnormal / stem::present in fewer numbers in organism / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism

Mutant lines with disrupted or induced

7 mutant lines found