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  3. RAFL04-17-L19

RAFL04-17-L19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12207)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-L19 - full reading 
TGAAACCGGT GTTTGTATAT AAATCTGATT GATATAGAAA TCGAAACTCA 
AATTGGAGAA CATTCGAGAA GCTTTGGATT TTTGAATCAC GAAGACATGG 
AAAAAACAGA ATCTGTATCA GGAAAGGGGA AGAGAGTGAT TGTTATCGGC 
GGCGGAATCG CCGGCTCTCT CGCTTCGAAA TTTCTTCAAT TCGATTCCGA 
TCTCACCCTC ATTGATCCGA AGGAGTATTT TGAGATTATT TGGGCAAGTT 
TAAGGTCAAT GGTAGAGCCA GCTTTTGCTG AAAGATCGGT GATAAACCAC 
AAGAAGTATT TACAAAATGG TCGTGTTGTG ACTTCTCCAG CGGTTAATAT 
CACAGACACC GATGTTTTGA CCGCGGATGG TCTTGTCTTT GGGTATGATT 
ATCTTGTTAT TGCTACTGGT CACAATGATG TGCTTCCTAA AACTAGGCAA 
GAGAAGTTAT CTCAATACCA AACAGAACAT GAGAAGATCA AGTCATCTGA 
GTCGATTCTG ATTGTTGGTG GAGGTCCGTC GGGTGTGGAG CTCGCTGCGG 
AGATAGCTGT CGATTTCCCT GAGAAAAAGG TTACTATAGT ACACAATGGA 
CCGAGATTGC TGGAATTTGT TGGTCAGAAA GCTGCAGACA AGGCATTAGA 
CTGGATGAAG TCCAAGAGAG TTGAAGTGAT ATTGAACCAA AGGGTTGATT 
TGAGTTCAGC TTCAGATGGG AGTAAAACGT ACCGAACATC GGGTGGAGAG 
ACGATACACG CGGATTGTCA CTTCCTCTGT ACTGGAAAAC CTTTGTCTTC 
AGAATGGCTA AAAGGAACTG TTCTGAAAGA TAACTTGGAT GGCAAAGGAA 
GGCTTATGGT CGATGAGTAC TTGAGAGTTA AGGGTCGCAA GAATGTATTC 
GCTATTGGTG ATATTACTGA TGTCCCGGAG ATGAAACAAG GCTACATTGC 
TGAGAAACAC GCCTCTGTAG CTACAAAGAA CATAAAGTTG TTGATGTCTG 
GTGGGAACGA GAAGAAGATG TCGACTTACA AGCCTGGTCC GGACATTGCC 
ATAATATCTT TAGGAAGAAA GGACTCGGTT GCTCAGTTCC CATTCATGAC 
AGTCTCGGGT TGCATACCTG GTTTGATCAA ATCTAAGGAT CTGTTTGTCG 
GGAAGACGAG GAAGGCAAGA GGTCTGGATC CTAACCTTGT GGAGCCTTGA 
GTGATTGTGC TTATCTTCAT GATGAGATTC TTCTTGTGCA GGCGCATTTC 
GTCGTTTATT TCATCACACG TTTGTTGTAT GTTGATTTGG TCCACTCTCC 
TGTTTGTGGA TTCTCAGAGT GGAGTGTTGT TTGCTTTTGT TGTAACATGA 
TTTGTAAAGA ATCTGTTCGA TTTCTCTAAA AGGAACCAAA GTTGTTCAAT 
AAGCCATAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT3G44190.1 [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther APOPTOSIS-INDUCING FACTOR (AIF)-LIKE MITCHOND 3.5e-136
HMMPanther NADH DEHYDROGENASE-RELATED 3.5e-136
HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3e-20
HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 5.2e-11
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.6e-09
FPrintScan Pyridine nucleotide-disulphide oxidoreductase, class-II 3.4e-05
FPrintScan Pyridine nucleotide-disulphide oxidoreductase, class-II 3.4e-05
FPrintScan Pyridine nucleotide-disulphide oxidoreductase, class-II 3.4e-05
Gene3D no description 3.5e-09
Gene3D no description 1.9e-20
superfamily FAD/NAD(P)-binding domain 1.6e-30

See the detailed result >

AT3G44190.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G22140.1); Has 14374 Blast hits to 14371 proteins in 2395 species: Archae - 444; Bacteria - 11667; Metazoa - 157; Fungi - 716; Plants - 246; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-L19 introduced

  • F08115 - rosette leaf::present in greater numbers in organism / sporophyte vegetative stage::decreased speed
  • F10249 - Specific phenotypes were NOT observed.
  • F21250 - seed::increased size / seed::increased length
  • F22745 - cauline leaf::epinastic / stem internode::decreased length
  • F29427 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found