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  3. RAFL04-17-L21

RAFL04-17-L21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12208)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-L21 - full reading 
AGAGAGAGAA GAAGGCGATC CATGGCGGAA TCTGTCTTCT CTTGTATACC 
AGAAGACGTA GTCTTCAACA TCTTCTTCAA GCTCCAAGAT GATCCAAGAA 
ACTGGGCTCG TCTCGCTTGC GTCTGCACCA AATTCTCCTC AATTGTTCGA 
AACGTTTGTT GTAAAACTCA GTGCTACTCC GCTATCCCCA CCGTCATCTC 
CGATCTCCTC CCTCTTCCTC CCTCCGCCGC CGCATCCGCT TCTTCATCCA 
CCGCGGCGGA TTCGTCTCTT ACTCCTCCCG GTGGTTGGGC TTCTTTATAC 
AAACTCGCTG TTTGTTGTCC TGGTCTCTTC CACGCTGGAA TTCTCCTCGA 
AAACTCCGAT TTCGGTTTAG AACGTGAGCT AGGTCCCGAT CAAAACCTCG 
ATCCGAAACC TACTACGACG GATCTAGCTC TTAACGACGA AGAAGTTTCG 
AAACCAGTTG GATCTGGTTT AGAAACGACT TCGTTTTGGT CTCTATATGA 
TGATCTCTAC ACAGATACTA TTCCCGCTCC TCCTCCCGAA GATTCAATCG 
ACGATCAAGA AGAAGAAATC GAAACGAGTG AGATCAGACC TGGACGAGAT 
CTTCCGGTAA GGAAACGAAG GAAGATTTGT CGATCTCTAG GATCTCATTT 
AGCTTCCGGT GGCTGGAACC TTAGCCGTGA ACAAGGCAAC AAGCTTCTCG 
CGAGTAGATT CCGAGGTGAT TGTCTCTACA TTTGCAATTG GCCTGGGTGT 
ATTCACGTAG AAGAGAAACG AAATTACATG TTGTTTAGAG GAGTCTTCAA 
GGATTTCAAA AGGTCTAGAG TTTGGAGAAC GATAAACGAC GGTAATCGGA 
GTAAGACCTC GGGTTTGAAA TGCGCGTTTT GTTTGTGCGA TGAGACTTGG 
GATTTGCATT CATCGTTTTG TTTGAGAAGA GTGTTTGGGT TTCATGATGA 
TGGTGAACCA GTTGTGAGAG CTTATGTTTG TGAGAATGGT CATGTCTCTG 
GTGCTTGGAC TGCTTTACCT CTCTACACTT GATAGCTCAC TAGAGAGGAC 
AGGTCTTTCA TTCTTCTTCC ACGGTCTCAA GTCTCAATCT TGTTTGATGT 
ATTTGTAGGA ATAGTGTCAT TGTGTTTCAA ATTCTGGTTA ATGTTTAAGT 
AATGGTTGAA GAAAATTGGC TCAACATATT GTGGTTGTTT TGTTTCAATG 
TTGACAACAT ATTAGACTC

Gene models with high sequence identity

  1. AT4G02440.1 [+] show detail - F-box family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G02440.1

Model type
Protein coding
Short Description
F-box family protein
Curator Summary
EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.
Computational Description
EMPFINDLICHER IM DUNKELROTEN LICHT 1 (EID1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: photoperiodism, flowering, red, far-red light phototransduction, leaf development, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 91 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-L21 introduced

  • F10147 - Specific phenotypes were NOT observed.
  • F12405 - Specific phenotypes were NOT observed.
  • F22618 - Specific phenotypes were NOT observed.
  • F24545 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found