1. Home
  2. Full-length cDNAs
  3. RAFL04-17-N17

RAFL04-17-N17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00600)

full reading [+] show sequence

Nucleotide sequence: RAFL04-17-N17 - full reading 
ACATTTTACA CTCATCTCGT TCTCTCTTCC GTCAATATGG AAGGCGTCAC 
CGTCGTGTCT TTCTTCCTTC TTTTCATCGC CACCGCCATG GCCGCCAAGT 
CCACCGTCTC CTTCCGTGAC GGCATGTTAC CAAACGGAGA CTTCGAGCTA 
GGACCAAAAC CATCAGACAT GAAAGGAACA GAAATACTAA ACAAACTAGC 
AATACCAAAC TGGGAAGTCA CAGGATTCGT CGAATACATT AAATCAGGAC 
ATAAACAAGG AGACATGCTT CTCGTTGTTC CCGCCGGTAA ATTCGCTGTA 
AGACTTGGGA ACGAAGCATC GATCAAACAA AGACTTAAAG TGGTTAAAGG 
AATGTATTAC TCACTCACTT TTAGTGCTGC TAGAACTTGT GCACAAGACG 
AGAGACTTAA CATATCTGTA GCACCTGACT CCGGTGTGAT TCCGATTCAG 
ACGGTTTATA GTAGTAGTGG TTGGGATTTA TATGCTTGGG CGTTTCAAGC 
TGAGAGTGAT GTTGCTGAAG TTGTGATTCA TAATCCTGGT GTTGAGGAAG 
ATCCAGCTTG TGGTCCACTT ATTGATGGTG TTGCTATGAG ATCTCTTTAC 
CCTCCTAGAC CAACTAATAA GAACATTTTG AAAAACGGAG GATTTGAAGA 
AGGTCCATTA GTATTACCCG GCTCGACAAC TGGAGTTTTG ATCCCACCGT 
TTATAGAAGA CGACCACTCT CCTTTACCTG GATGGATGGT GGAGTCTCTC 
AAAGCTGTCA AGTACGTAGA CGTTGAACAT TTCTCAGTCC CACAGGGTCG 
CAGAGCTATT GAGCTTGTAG CGGGTAAAGA GAGTGCCATC GCTCAAGTGG 
TTCGGACTGT CATTGGGAAG ACTTACGTGC TGTCTTTTGC GGTTGGAGAC 
GCCAACAATG CTTGCAAAGG ATCAATGGTG GTTGAGGCTT TTGCAGGAAA 
AGATACACTT AAGGTCCCTT ACGAGTCGAA AGGCACAGGA GGGTTTAAAC 
GAGCTTCTAT TCGATTTGTG GCGGTTTCGA CCCGATCAAG AATTATGTTC 
TACAGCACTT TCTATGCCAT GAGGAGCGAT GATTTCTCGT CATTGTGTGG 
GCCTGTGATC GATGATGTCA AGCTTATAAG CGTTCGTAAA CCATAGATGA 
ATCACCAATC CTATTACAAG AAAATGCATC GTGTGGTCTT CTTTTATTTT 
CCTTAAACTG TCTTTGGTGT GTGTTGGATT TTATTGAAAC GAGAAGGTGA 
AAAAAACAGA GTTTTATTTA CGAGAGTTAG GGTTTTATAT AGGCAGATGG 
GCCTTTGCTT ATATTGTATT TTCTTGTATG AGAAGGCAAA AGAAACGTTG 
CCTATATCTT ATGTATCTAG GCCTTTTAAT TTTTATGGAA GAGTTAC

Gene models with high sequence identity

  1. AT5G25460.1 [+] show detail - Protein of unknown function, DUF642
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF642 6.7e-162
superfamily Galactose-binding domain-like 2.8e-05
superfamily Galactose-binding domain-like 0.003

See the detailed result >

AT5G25460.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF642
Computational Description
Protein of unknown function, DUF642; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL04-17-N17 introduced

  • F14706 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found